View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2940_low_4 (Length: 275)
Name: NF2940_low_4
Description: NF2940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2940_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 5 - 257
Target Start/End: Original strand, 38489761 - 38490013
Alignment:
| Q |
5 |
atatatcatagctttacattttaccagtattcatataatcgaaaggataatttgattacacggatttgatattttttcactgaacaaagttatataatat |
104 |
Q |
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| T |
38489761 |
atatatcatagctttacattttaccagtattcatataatcgaaaggagaatttgattacacggatttgttattttttcactgagcaaagttatataatat |
38489860 |
T |
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| Q |
105 |
aacacccnnnnnnnttcatacataaaaaaccactacaggttcttnnnnnnncatggtgtatatgtcattatcaatataatcaaataaaattttacacgat |
204 |
Q |
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||| ||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | | |
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| T |
38489861 |
aactcccaaaaaaattcatacataaaaaaccactacaggttcttaaaaaaacatggtgtatacgtcattatcaatataatcaaataaaattttacatgct |
38489960 |
T |
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| Q |
205 |
gtagagnnnnnnnttatgtatgaatataatttcactaacacttggtccttttc |
257 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38489961 |
gtagagcccccccttatgtatgaatataatttcactaacacttggtccttttc |
38490013 |
T |
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