View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2941_low_12 (Length: 234)
Name: NF2941_low_12
Description: NF2941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2941_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 47947730 - 47947949
Alignment:
| Q |
1 |
tgtaaataatagttgtgatatgtaccgatcgattttccaaattaacataatcgaggtttgagaaattaagttttgtgttggtggctgaattgacagatgg |
100 |
Q |
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| T |
47947730 |
tgtaaataatagttgtgatatgtaccgatcgattttccaaattaacataatcgaggtttgagaaattaagttttgtgttggtggctgaattgacagatgg |
47947829 |
T |
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| Q |
101 |
ttccggaggtttttgtccgaagcggttaagtgaaacagctcttaacaagtcctcctttcgaattctacgaataggtacagtttcttttggacaacttcca |
200 |
Q |
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| T |
47947830 |
ttccggaggtttttgtccgaagcggttaagtgaaacagctcttaacaagtcctcctttcgaattctacgaataggtacagtttcttttggacaacttcca |
47947929 |
T |
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| Q |
201 |
cttttctgccatgtctgaaa |
220 |
Q |
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|||||||||||||||||||| |
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| T |
47947930 |
cttttctgccatgtctgaaa |
47947949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 105 - 217
Target Start/End: Original strand, 47921141 - 47921253
Alignment:
| Q |
105 |
ggaggtttttgtccgaagcggttaagtgaaacagctcttaacaagtcctcctttcgaattctacgaataggtacagtttcttttggacaacttccacttt |
204 |
Q |
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| T |
47921141 |
ggaggtttttgtccgaagcgagcaagtgaaacagctctcaacaagtcttctttccgaattcttcgaatagggacagtttcttctggacaacttccacttt |
47921240 |
T |
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| Q |
205 |
tctgccatgtctg |
217 |
Q |
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| T |
47921241 |
tctgccatgtctg |
47921253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 53 - 220
Target Start/End: Original strand, 47941842 - 47942009
Alignment:
| Q |
53 |
gaggtttgagaaattaagttttgtgttggtggctgaattgacagatggttccggaggtttttgtccgaagcggttaagtgaaacagctcttaacaagtcc |
152 |
Q |
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| T |
47941842 |
gaggttggagaaattaaggtttgtggtatttgttgaattcacataaggttccgggggtttttgtccaaatcgatcaagtgaaacagctctcaacaagtca |
47941941 |
T |
|
| Q |
153 |
tcctttcgaattctacgaataggtacagtttcttttggacaacttccacttttctgccatgtctgaaa |
220 |
Q |
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| T |
47941942 |
tccttttgaattctacgaataggtacggttccttttggacaacttccgcttttcgtccatgtttgaaa |
47942009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 47929525 - 47929638
Alignment:
| Q |
107 |
aggtttttgtccgaagcggttaagtgaaacagctcttaacaagtcctcctttcgaattctacgaataggtacagtttcttttggacaacttccacttttc |
206 |
Q |
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| T |
47929525 |
aggtttttgtccgaagcggtcaagtgaaacagctctgagcaagtcctcttttcgaattcttcgtataggaacagtttcttctggacaacttccacttttc |
47929624 |
T |
|
| Q |
207 |
tgccatgtctgaaa |
220 |
Q |
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| T |
47929625 |
gtccatgtttgaaa |
47929638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 47910478 - 47910681
Alignment:
| Q |
20 |
atgtaccgatcgattttccaaattaacataa---tcgaggtttgagaaattaagttttgtgttggtggctgaattgacagatggttccggaggtttttgt |
116 |
Q |
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|||||||| ||||||| |||||||||| || |||||||| ||||||||| |||||||| | |||||| ||| || ||||| |||||||||| |
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| T |
47910478 |
atgtaccgcgcgatttttcaaattaacaaaaccatcgaggttgtggaaattaaggtttgtgttatatgttgaattcacaaatagttccaaaggtttttgt |
47910577 |
T |
|
| Q |
117 |
ccgaagcggttaagtgaaacagctcttaacaagtcctcctttcgaattctacgaataggtacagtttcttttggacaacttccacttttctgccatgtct |
216 |
Q |
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| T |
47910578 |
ccgaagcggtcaagtgaaacagctctcagcaagtcctcttttctaattcttcttattggaacagtttcttctggacaacttccacttttcgtccatgttt |
47910677 |
T |
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| Q |
217 |
gaaa |
220 |
Q |
| |
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|||| |
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| T |
47910678 |
gaaa |
47910681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 3859231 - 3859168
Alignment:
| Q |
155 |
ctttcgaattctacgaataggtacagtttcttttggacaacttccacttttctgccatgtctga |
218 |
Q |
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| T |
3859231 |
cttttgaattcttcgaatggggacagttccttttggacaccttccacttttatgccatgtctga |
3859168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 4555353 - 4555296
Alignment:
| Q |
155 |
ctttcgaattctacgaataggtacagtttcttttggacaacttccacttttctgccat |
212 |
Q |
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|||||| ||||| |||| ||||| ||| | ||||||||||||||||||||||||||| |
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| T |
4555353 |
ctttcgtattcttcgaacaggtattgttccctttggacaacttccacttttctgccat |
4555296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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