View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2941_low_13 (Length: 227)
Name: NF2941_low_13
Description: NF2941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2941_low_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 21814805 - 21815026
Alignment:
| Q |
7 |
tttttaataaaaaataatccctcctgtaaaaggttgtcaaaaggtttgatgcattttgaatcctttttaacnnnnnnntaatatccccgcctctaagagg |
106 |
Q |
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| T |
21814805 |
tttttaataaaaaataatccctcctgtaaaaggttgtcaaaaggtttgatgcattttgaaccctttttaacaaaaaaataatatccctgcctctaagtgg |
21814904 |
T |
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| Q |
107 |
ttgtcaaagatttgtttcattttcaaactctaaagggttccttctaattttttaaagaaacaacttcaaaaatagaagcaacaagtc-ttttctttattt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21814905 |
ttgtcaaagatttgtttcattttcaaactctaaagggttccttctaattttttaaagaaacaacttcaaaaatagaagcaacaagtctttttctttattt |
21815004 |
T |
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| Q |
206 |
tccaagacttcaagattctaat |
227 |
Q |
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||||||||||||| | |||||| |
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| T |
21815005 |
tccaagacttcaaaaatctaat |
21815026 |
T |
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