View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2941_low_3 (Length: 572)
Name: NF2941_low_3
Description: NF2941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2941_low_3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 239 - 572
Target Start/End: Complemental strand, 39809421 - 39809088
Alignment:
| Q |
239 |
atgtatgttgatgaatgaaaattggcaatcaagtttgataataattgaatgataaaaaccttcttcttcttgcgagcaagatgccaaatacgccaacaca |
338 |
Q |
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| T |
39809421 |
atgtatattgatgaatgaaaattggcaatcaagtttgataataattgaatgataaaaaccttcttcttcttgcgagcaagatgccaaatacgccaacaca |
39809322 |
T |
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| Q |
339 |
tgttctcaagtcttgagctacgttcccttgtattacgagtggcaacaaccttaagccatgtacgatgaagatcagactcatcaacagcactcactacttc |
438 |
Q |
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| T |
39809321 |
tgttctcaagtcttgagctacgttcccttgtattacgagtggcaacaaccttaagccatgtacgatgaagatcagactcatcaacagcactcactacttc |
39809222 |
T |
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| Q |
439 |
ttcaacaaagtactttgttggattgaaatgatcaccactttctctcgctgcagccgccaccctttgctgctcttcaacggtggtagaagcgccaccaccg |
538 |
Q |
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| T |
39809221 |
ttcaacaaagtactttgttggattgaaatgatcaccactttctctcgctgcagccgccaccctttgctgctcttcaacggtggtagaagcaccaccaccg |
39809122 |
T |
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| Q |
539 |
gtggatagtatagcctcaaggtagccattaatcc |
572 |
Q |
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| T |
39809121 |
gtggatagtatagcctcaaggtagccattaatcc |
39809088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 39809608 - 39809454
Alignment:
| Q |
1 |
tttcccatcttctgtatgctaacctttgaagttcctctccttccacctacaaagtatgcctcattagtactctactagtttcaccaaacaaatcaagtgt |
100 |
Q |
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| T |
39809608 |
tttcccatcttctgtatgctaacctttgaagttcctctccttccacctacaaagtatgcctcattagtactctactagtttcaccaaacaaatcaagtgt |
39809509 |
T |
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| Q |
101 |
ttgagctgaaacactcaaaaaatgtagaagactaattaagagttcaaactttggt |
155 |
Q |
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| T |
39809508 |
ttgagctgaaacactcaaaaaatgtagaagactaattaagagttcaaactttggt |
39809454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 295 - 468
Target Start/End: Complemental strand, 15794985 - 15794812
Alignment:
| Q |
295 |
aaccttcttcttcttgcgagcaagatgccaaatacgccaacacatgttctcaagtcttgagctacgttcccttgtattacgagtggcaacaaccttaagc |
394 |
Q |
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| T |
15794985 |
aacctgcttcttctttcgtgcaagatgccaaatacgccaacacatgttctccaaccttgaacttctttcccttgtgttgcgtgttgcaaccaccttaacc |
15794886 |
T |
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| Q |
395 |
catgtacgatgaagatcagactcatcaacagcactcactacttcttcaacaaagtactttgttggattgaaatg |
468 |
Q |
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| T |
15794885 |
caagtgcgatataaatcagattcatcaacacttgccacaacctcttccacaaaatactttgttggattgaaatg |
15794812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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