View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2941_low_4 (Length: 476)
Name: NF2941_low_4
Description: NF2941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2941_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 8 - 312
Target Start/End: Original strand, 36567110 - 36567414
Alignment:
| Q |
8 |
gacatcatcagcatcaatcattatcatgtctgcacccgcttctaaacacctctcagctctcctaatcaagagatccacatcttctactaattctgcggcg |
107 |
Q |
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| T |
36567110 |
gacatcatcagcatcaatcattatcatgtctgcacccgcttctaaacacctctcagctctcctaatcaagagatccacatcttctactaattctgcggcg |
36567209 |
T |
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| Q |
108 |
aaagtttcaatacaaggaaaatcttcagtagattgatatcttatgtcagccagtaaccagtaacttcaaagtttcttaagccccgtttgaaacagaaaaa |
207 |
Q |
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| T |
36567210 |
aaagtttcaatacaaggaaaatcttcagtagattgatatcttatgtcagccagtaaccagtaacttcaaagtttcttaagccccgtttgaaacagaaaaa |
36567309 |
T |
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| Q |
208 |
gaggttcaacaaaatacttcacttgttttatgttttagtagtccaattcagaagataacatttatcagaatggctaaatatgttcaaatccacctcaaac |
307 |
Q |
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| T |
36567310 |
gaggttcaacaaaatacttcacttgttttatgttttagtagtccaattcagaagataacatttatcagaatggctaaatatgttcaaatccacctcaaac |
36567409 |
T |
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| Q |
308 |
agaga |
312 |
Q |
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||||| |
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| T |
36567410 |
agaga |
36567414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 308 - 458
Target Start/End: Original strand, 36567447 - 36567597
Alignment:
| Q |
308 |
agagaaagagagagtgaaatatctttaccatatgatctaggtgctggaggaatataagccccataagctctatcaccacctctgggaatatcagacttat |
407 |
Q |
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| T |
36567447 |
agagaaagagagagtgaaatatctttaccatatgatctaggtgctggaggaatataagccccataagctctatcaccacctctgggaatatcagacttat |
36567546 |
T |
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| Q |
408 |
tgaacttaacttcaaaatgaggcttagctttcataccaccagttttgacca |
458 |
Q |
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| T |
36567547 |
tgaacttaacttcaaaatgaggcttagctttcataccaccagttttgacca |
36567597 |
T |
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