View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2941_low_5 (Length: 426)

Name: NF2941_low_5
Description: NF2941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2941_low_5
NF2941_low_5
[»] chr4 (3 HSPs)
chr4 (1-420)||(2244327-2244734)
chr4 (224-291)||(10430721-10430788)
chr4 (225-291)||(54780297-54780363)
[»] chr7 (3 HSPs)
chr7 (219-348)||(35406185-35406311)
chr7 (219-348)||(47261904-47262030)
chr7 (362-405)||(23071699-23071742)
[»] chr5 (3 HSPs)
chr5 (219-348)||(9718127-9718253)
chr5 (219-348)||(15928200-15928326)
chr5 (224-291)||(23284729-23284796)
[»] chr8 (1 HSPs)
chr8 (245-320)||(34546425-34546500)
[»] chr1 (2 HSPs)
chr1 (219-346)||(1803400-1803524)
chr1 (224-286)||(21741032-21741094)
[»] chr6 (1 HSPs)
chr6 (224-283)||(19740350-19740409)
[»] chr2 (2 HSPs)
chr2 (225-348)||(38987991-38988111)
chr2 (239-291)||(40446095-40446147)
[»] chr3 (1 HSPs)
chr3 (224-284)||(54577634-54577694)


Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 2244327 - 2244734
Alignment:
Q  1 acaatccttcacgctcaattcctagctgtggagaacgccgagttgcactgattcactcgacggtaaagggaaagctgcggagttgatttgttttttcaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2244327 acaatccttcacgctcaattcctagctgtggagaacgccgagttgcactgattcactcgacggtaaagggaaagctacggagttgatttgttttttcaac 2244426  T
Q  101 tcagtggtgagtgacaaatttcaggttctgaattcttttctcaatatgcctcctaagattcctcctaagattagaaaatatgaatccggatatgagaaac 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||            ||||| ||||||||||||||||||||||    
T  2244427 tcagtagtgagtgacaaatttcaggttctgaattcttttctcaatatgcctcctaagttt------------agaaagtatgaatccggatatgagaaac 2244514  T
Q  201 gtaagnnnnnnnnnnnncttgaagagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaattcctgttgaaaatcagaa 300  Q
    |||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2244515 gtaagaaaaagaaaaaacttgaagagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaattcctgttgaaaatcagaa 2244614  T
Q  301 tgtcggtaatgttaatgttgatgttgaaattcttgaaaatgtggttacatctgagaagagtaatatggagaatgaaagtgttgatttggaaaatagaggt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2244615 tgtcggtaatgttaatgttgatgttgaaattcttgaaaatgtggttacaactgagaagagtaatatggagaatgaaagtgttgatttggaaaatagaggt 2244714  T
Q  401 gatgttaatggtgatgatgt 420  Q
    ||||||||||||||||||||    
T  2244715 gatgttaatggtgatgatgt 2244734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 10430788 - 10430721
Alignment:
Q  224 gagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaattcctgttga 291  Q
    ||||| ||| |||| |||| ||||||||||||||||||| || |||||||| ||||||||||| ||||    
T  10430788 gagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaattcctattga 10430721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 54780297 - 54780363
Alignment:
Q  225 agtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaattcctgttga 291  Q
    |||| ||| |||| |||| ||||||||||||||||||| || |||||||| ||||||||||| ||||    
T  54780297 agttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaattccttttga 54780363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 348
Target Start/End: Complemental strand, 35406311 - 35406185
Alignment:
Q  219 ttgaagagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaacc---acaaattcctgttgaaaatcagaatgtcggtaatgttaa 315  Q
    ||||| |||| ||||||||||||| |||||||||| |||| ||| | |||||||||||   |||||||||| |||||||| | |||||      || |||    
T  35406311 ttgaaaagttcattcaatctcaaaaaggagctcttaataagtttttgataaaagaaccgcaacaaattcctattgaaaatgaaaatgt------tgataa 35406218  T
Q  316 tgttgatgttgaaattcttgaaaatgtggttac 348  Q
    ||||||||||| | |||||||||||||||||||    
T  35406217 tgttgatgttggagttcttgaaaatgtggttac 35406185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 348
Target Start/End: Complemental strand, 47262030 - 47261904
Alignment:
Q  219 ttgaagagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaacc---acaaattcctgttgaaaatcagaatgtcggtaatgttaa 315  Q
    ||||| |||| ||||||||||||| |||||||||| |||| ||| | |||||||||||   |||||||||| |||||||| | |||||      || |||    
T  47262030 ttgaaaagttaattcaatctcaaaaaggagctcttaataagtttttgataaaagaaccgcaacaaattcctattgaaaatgaaaatgt------tgataa 47261937  T
Q  316 tgttgatgttgaaattcttgaaaatgtggttac 348  Q
    ||||||||||| | |||||||||||||||||||    
T  47261936 tgttgatgttggagttcttgaaaatgtggttac 47261904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 405
Target Start/End: Complemental strand, 23071742 - 23071699
Alignment:
Q  362 aatatggagaatgaaagtgttgatttggaaaatagaggtgatgt 405  Q
    ||||||||||||||||||||||||  | ||||||||||||||||    
T  23071742 aatatggagaatgaaagtgttgatcagaaaaatagaggtgatgt 23071699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 348
Target Start/End: Original strand, 9718127 - 9718253
Alignment:
Q  219 ttgaagagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaacc---acaaattcctgttgaaaatcagaatgtcggtaatgttaa 315  Q
    ||||| |||| ||||||||||||| |||||||||| |||| ||| | |||||||||||   |||||||||| |||||||| | |||||      || |||    
T  9718127 ttgaaaagttaattcaatctcaaaaaggagctcttaataagtttttgataaaagaaccgcaacaaattcctattgaaaatgaaaatgt------tgataa 9718220  T
Q  316 tgttgatgttgaaattcttgaaaatgtggttac 348  Q
    ||||||||||| | |||||||||||||||||||    
T  9718221 tgttgatgttggagttcttgaaaatgtggttac 9718253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 348
Target Start/End: Original strand, 15928200 - 15928326
Alignment:
Q  219 ttgaagagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaacc---acaaattcctgttgaaaatcagaatgtcggtaatgttaa 315  Q
    ||||| |||| ||||||||||||| |||||||||| |||| ||| | |||||||||||   |||||||||| |||||||| | |||||      || |||    
T  15928200 ttgaaaagttaattcaatctcaaaaaggagctcttaataagtttttgataaaagaaccgcaacaaattcctattgaaaatgaaaatgt------tgataa 15928293  T
Q  316 tgttgatgttgaaattcttgaaaatgtggttac 348  Q
    ||||||||||| | |||||||||||||||||||    
T  15928294 tgttgatgttggagttcttgaaaatgtggttac 15928326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 23284796 - 23284729
Alignment:
Q  224 gagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaattcctgttga 291  Q
    ||||| ||| |||| |||| |||||||||||| |||||| || |||||||| ||||||||||| ||||    
T  23284796 gagttaattgaatcccaaacaggagctcttgaaaaatttattgtaaaagaaacacaaattcctattga 23284729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 320
Target Start/End: Complemental strand, 34546500 - 34546425
Alignment:
Q  245 ggagctcttgataaatttcttataaaagaaccacaaattcctgttgaaaatcagaatgtcggtaatgttaatgttg 320  Q
    |||||||||||||||||| |||||||| ||| |||||||||| | |||||||||||||| | |||||  |||||||    
T  34546500 ggagctcttgataaatttgttataaaaaaacaacaaattcctttcgaaaatcagaatgttgataatgacaatgttg 34546425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 346
Target Start/End: Complemental strand, 1803524 - 1803400
Alignment:
Q  219 ttgaagagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaacc---acaaattcctgttgaaaatcagaatgtcggtaatgttaa 315  Q
    ||||| |||| ||||||||||||| |||||||||| |||| ||| | |||||| | ||   |||||||||| |||||||| | |||||      || |||    
T  1803524 ttgaaaagttaattcaatctcaaaaaggagctcttaataagtttttgataaaatatccgcaacaaattcctattgaaaatgaaaatgt------tgataa 1803431  T
Q  316 tgttgatgttgaaattcttgaaaatgtggtt 346  Q
    ||||||||||| | |||||||||||||||||    
T  1803430 tgttgatgttggagttcttgaaaatgtggtt 1803400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 286
Target Start/End: Complemental strand, 21741094 - 21741032
Alignment:
Q  224 gagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaattcct 286  Q
    ||||| ||| |||| |||| ||||||||||||||||||| || ||||||||  ||||||||||    
T  21741094 gagttaattgaatcccaaacaggagctcttgataaatttattttaaaagaaatacaaattcct 21741032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 283
Target Start/End: Complemental strand, 19740409 - 19740350
Alignment:
Q  224 gagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaatt 283  Q
    ||||| ||| |||| |||| ||||||||||||||||||| || |||||||| ||||||||    
T  19740409 gagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaatt 19740350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 348
Target Start/End: Original strand, 38987991 - 38988111
Alignment:
Q  225 agtttattcaatctcaaagaggagctcttgataaatttcttataaaagaacc---acaaattcctgttgaaaatcagaatgtcggtaatgttaatgttga 321  Q
    |||| ||||||||||||| |||||||||| |||| ||| | |||||||||||   |||||||| | | |||||| | |||||      || |||||||||    
T  38987991 agttaattcaatctcaaaaaggagctcttaataagtttttgataaaagaaccgcaacaaattcttatcgaaaatgaaaatgt------tgataatgttga 38988084  T
Q  322 tgttgaaattcttgaaaatgtggttac 348  Q
    ||||| | |||||||||||| ||||||    
T  38988085 tgttggagttcttgaaaatgcggttac 38988111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 40446095 - 40446147
Alignment:
Q  239 caaagaggagctcttgataaatttcttataaaagaaccacaaattcctgttga 291  Q
    |||| ||||||||||||||| ||| || |||||||| ||||||||||| ||||    
T  40446095 caaacaggagctcttgataattttattgtaaaagaaacacaaattcctattga 40446147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 54577694 - 54577634
Alignment:
Q  224 gagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaattc 284  Q
    ||||| ||| |||| |||| | ||||||||||||||||| || |||||||| |||||||||    
T  54577694 gagttaattgaatcccaaacatgagctcttgataaatttattgtaaaagaaacacaaattc 54577634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University