View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2941_low_6 (Length: 290)

Name: NF2941_low_6
Description: NF2941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2941_low_6
NF2941_low_6
[»] chr4 (14 HSPs)
chr4 (18-283)||(2390965-2391230)
chr4 (18-283)||(2381337-2381602)
chr4 (18-283)||(2380082-2380338)
chr4 (53-167)||(2382562-2382676)
chr4 (184-241)||(2367678-2367735)
chr4 (23-55)||(2376407-2376439)
chr4 (112-212)||(2621192-2621292)
chr4 (187-230)||(1547469-1547512)
chr4 (184-227)||(2373256-2373299)
chr4 (176-251)||(2460589-2460664)
chr4 (183-230)||(12126879-12126926)
chr4 (18-51)||(2525592-2525625)
chr4 (187-232)||(6007668-6007713)
chr4 (23-59)||(2467387-2467423)
[»] chr1 (3 HSPs)
chr1 (127-251)||(15837955-15838079)
chr1 (201-248)||(9581951-9581998)
chr1 (202-248)||(9587510-9587556)
[»] chr3 (1 HSPs)
chr3 (187-231)||(513446-513490)
[»] chr8 (2 HSPs)
chr8 (187-232)||(32152209-32152254)
chr8 (186-251)||(39516859-39516924)
[»] chr6 (1 HSPs)
chr6 (187-242)||(10578802-10578857)
[»] chr5 (2 HSPs)
chr5 (187-233)||(32268773-32268819)
chr5 (187-232)||(41900267-41900312)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 2391230 - 2390965
Alignment:
Q  18 cgatctgaggtctaaagggaaagtggagatttgggtaagaagcgtgttggggtgattgtgttgagagaagtaattgaggttggtggatgtgagattgagg 117  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||    
T  2391230 cgatctgaggactaaagggaaagtggagatttgggtaagaagcgtgttggggcgattgcattgagagaagtaattgaggttggtggatgtgagattgagg 2391131  T
Q  118 gatgtgacattagagaaccgttggaagatttgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatggagagta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2391130 gatgtgacattagagaaccgttggaagatttgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatggagagta 2391031  T
Q  218 attgtttggagacgatagaaagagacttgaaagtatagtgatctccatcaaggaatttgatgatgt 283  Q
    ||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  2391030 attgtttcgagacgatagaaagagacttgaaagtatagtggtcttcatcaaggaatttgatgatgt 2390965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 2381602 - 2381337
Alignment:
Q  18 cgatctgaggtctaaagggaaagtggagatttgggtaagaagcgtgttggggtgattgtgttgagagaagtaattgaggttggtggatgtgagattgagg 117  Q
    |||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||| |||||||| |||||| ||||||||||    
T  2381602 cgatttgaggtctaaagggaaagcggagatttgggtaagaagcatgttggggtgattgtgtagagaaaagtaagtgaggttgctggatgcgagattgagg 2381503  T
Q  118 gatgtgacattagagaaccgttggaagatttgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatggagagta 217  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||| |||||||    
T  2381502 gatgtgacactagagaagcgttggaagagttgaggaatgaaagggatggtttgtagggtgattttgacggagaatcggagactgttggtgatcgagagta 2381403  T
Q  218 attgtttggagacgatagaaagagacttgaaagtatagtgatctccatcaaggaatttgatgatgt 283  Q
    | |||||||||||||| |||||||||||||||||  |||| |||||||  ||||||||||||||||    
T  2381402 actgtttggagacgatggaaagagacttgaaagtgcagtggtctccattgaggaatttgatgatgt 2381337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 2380338 - 2380082
Alignment:
Q  18 cgatctgaggtctaaagggaaagtggagatttgggtaagaagcgtgttggggtgattgtgttgagagaagtaattgaggttggtggatgtgagattgagg 117  Q
    |||| |||| |||||||| |||| ||||||||| ||||||||||||||| ||||||||| ||||| ||         ||||| |||||||||||||||||    
T  2380338 cgatttgagatctaaaggtaaagcggagatttgtgtaagaagcgtgttgaggtgattgtattgaggga---------ggttgatggatgtgagattgagg 2380248  T
Q  118 gatgtgacattagagaaccgttggaagatttgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatggagagta 217  Q
    |||||||  |||    ||| ||| ||||   ||||||| |||||||||||||||||||||||||||| || |||||||| | ||| |||||| |||||||    
T  2380247 gatgtgatgttacgacacctttgcaagaggcgaggaataaaagggatggtttgttgggtgattttgagggtgaatcggaaactgtaggtgatcgagagta 2380148  T
Q  218 attgtttggagacgatagaaagagacttgaaagtatagtgatctccatcaaggaatttgatgatgt 283  Q
    | |||||||||||||| ||||||||||||| |||| |||| |||||||||||||||||||||||||    
T  2380147 actgtttggagacgatggaaagagacttgacagtacagtggtctccatcaaggaatttgatgatgt 2380082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 167
Target Start/End: Complemental strand, 2382676 - 2382562
Alignment:
Q  53 taagaagcgtgttggggtgattgtgttgagagaagtaattgaggttggtggatgtgagattgagggatgtgacattagagaaccgttggaagatttgagg 152  Q
    |||||||||||||| ||| ||||| ||||||||||| | ||||||||  |||||||| |||||||||||||||||||| || || | ||||||   ||||    
T  2382676 taagaagcgtgttgaggtaattgtattgagagaagtgagtgaggttgagggatgtgatattgagggatgtgacattagggagccttcggaagaggcgagg 2382577  T
Q  153 aatgaaagggatggt 167  Q
    |||||||||||||||    
T  2382576 aatgaaagggatggt 2382562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 2367735 - 2367678
Alignment:
Q  184 atggagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagag 241  Q
    |||||||||||||||  ||||||||||||||| ||||||||||||||||| |||||||    
T  2367735 atggagaatcggagacggttggtgatggagagaaattgtttggagacgatggaaagag 2367678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 2376439 - 2376407
Alignment:
Q  23 tgaggtctaaagggaaagtggagatttgggtaa 55  Q
    |||||||||||||||||||||||||||||||||    
T  2376439 tgaggtctaaagggaaagtggagatttgggtaa 2376407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 2621292 - 2621192
Alignment:
Q  112 ttgagggatgtgacattagagaaccgttggaagatttgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatgg 211  Q
    ||||||||||||| ||||| |||||  | |||||   |||||||||||||||||||||  | || |||| |||||||||| || |||  |||||||||||    
T  2621292 ttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatgg 2621193  T
Q  212 a 212  Q
    |    
T  2621192 a 2621192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 1547512 - 1547469
Alignment:
Q  187 gagaatcggagattgttggtgatggagagtaattgtttggagac 230  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||    
T  1547512 gagaatcggagacggttggtgatggagaggaattgtttggagac 1547469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 2373299 - 2373256
Alignment:
Q  184 atggagaatcggagattgttggtgatggagagtaattgtttgga 227  Q
    ||||||||||||||||  |||||||||||||| |||||||||||    
T  2373299 atggagaatcggagatgattggtgatggagagaaattgtttgga 2373256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 2460589 - 2460664
Alignment:
Q  176 tgattttgatggagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagagacttgaaagt 251  Q
    |||||||||  ||||||||||||   |||||||||||||| || ||||||||||| || || ||||| ||||||||    
T  2460589 tgattttgagagagaatcggagacgattggtgatggagaggaactgtttggagaccatggagagagatttgaaagt 2460664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 12126879 - 12126926
Alignment:
Q  183 gatggagaatcggagattgttggtgatggagagtaattgtttggagac 230  Q
    |||||||||| |||||  ||||||||||||||| ||||||||||||||    
T  12126879 gatggagaataggagacggttggtgatggagagaaattgtttggagac 12126926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 2525592 - 2525625
Alignment:
Q  18 cgatctgaggtctaaagggaaagtggagatttgg 51  Q
    |||| |||||||||||||||||||||||||||||    
T  2525592 cgatttgaggtctaaagggaaagtggagatttgg 2525625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 6007668 - 6007713
Alignment:
Q  187 gagaatcggagattgttggtgatggagagtaattgtttggagacga 232  Q
    |||||||||||| |||||||||||||||| || ||||| |||||||    
T  6007668 gagaatcggagactgttggtgatggagaggaactgtttcgagacga 6007713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 2467387 - 2467423
Alignment:
Q  23 tgaggtctaaagggaaagtggagatttgggtaagaag 59  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  2467387 tgaggtccaaagggaaagtggagattttggtaagaag 2467423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 127 - 251
Target Start/End: Complemental strand, 15838079 - 15837955
Alignment:
Q  127 ttagagaaccgttggaagatttgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatggagagtaattgtttgg 226  Q
    |||| ||||| ||||||||  | ||||||||||||||| ||||| |   ||||||||| |||||||||||||  ||||||||||||||| || |||||||    
T  15838079 ttagggaacctttggaagaggttaggaatgaaagggattgtttgatctatgattttgagggagaatcggagacggttggtgatggagagaaactgtttgg 15837980  T
Q  227 agacgatagaaagagacttgaaagt 251  Q
    |||| || || || |||||||||||    
T  15837979 agaccatcgagagggacttgaaagt 15837955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 9581951 - 9581998
Alignment:
Q  201 gttggtgatggagagtaattgtttggagacgatagaaagagacttgaa 248  Q
    ||||||||| ||||| || ||||||||||||| |||||||||||||||    
T  9581951 gttggtgatagagagaaactgtttggagacgacagaaagagacttgaa 9581998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 9587510 - 9587556
Alignment:
Q  202 ttggtgatggagagtaattgtttggagacgatagaaagagacttgaa 248  Q
    ||||||| |||||| || ||||||||||||| |||||||||||||||    
T  9587510 ttggtgacggagagaaactgtttggagacgacagaaagagacttgaa 9587556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 513490 - 513446
Alignment:
Q  187 gagaatcggagattgttggtgatggagagtaattgtttggagacg 231  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||    
T  513490 gagaatcggagattgttggtgatggagagtaactgttttgagacg 513446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 32152209 - 32152254
Alignment:
Q  187 gagaatcggagattgttggtgatggagagtaattgtttggagacga 232  Q
    |||||||||||| |||||||||||||||| || |||||||||||||    
T  32152209 gagaatcggagactgttggtgatggagaggaactgtttggagacga 32152254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 39516859 - 39516924
Alignment:
Q  186 ggagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagagacttgaaagt 251  Q
    |||||||| ||||  ||||||||||| ||| |||||| |||||||||| || ||||||||||||||    
T  39516859 ggagaatctgagacggttggtgatggcgagaaattgtctggagacgatggagagagacttgaaagt 39516924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 10578857 - 10578802
Alignment:
Q  187 gagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagaga 242  Q
    |||||| ||||| ||||||| |||||||| |||||||||||||||| ||| |||||    
T  10578857 gagaataggagactgttggttatggagaggaattgtttggagacgagagatagaga 10578802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 32268773 - 32268819
Alignment:
Q  187 gagaatcggagattgttggtgatggagagtaattgtttggagacgat 233  Q
    |||||||| |||  |||||||||||||||||| ||||||||||||||    
T  32268773 gagaatcgaagacggttggtgatggagagtaactgtttggagacgat 32268819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 41900312 - 41900267
Alignment:
Q  187 gagaatcggagattgttggtgatggagagtaattgtttggagacga 232  Q
    |||||||| ||| |||||||||||||||| || |||||||||||||    
T  41900312 gagaatcgaagagtgttggtgatggagagaaactgtttggagacga 41900267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University