View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2942R-Insertion-1 (Length: 860)

Name: NF2942R-Insertion-1
Description: NF2942R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2942R-Insertion-1
NF2942R-Insertion-1
[»] chr2 (5 HSPs)
chr2 (9-346)||(40209510-40209842)
chr2 (625-820)||(3934373-3934569)
chr2 (625-824)||(38974751-38974951)
chr2 (451-529)||(40210140-40210218)
chr2 (408-459)||(40209904-40209955)
[»] chr1 (1 HSPs)
chr1 (629-848)||(47192628-47192845)
[»] chr8 (5 HSPs)
chr8 (625-824)||(16659739-16659939)
chr8 (625-824)||(22015753-22015953)
chr8 (625-824)||(1668945-1669145)
chr8 (625-824)||(38520305-38520505)
chr8 (771-816)||(27185452-27185497)
[»] chr4 (3 HSPs)
chr4 (624-824)||(45144858-45145059)
chr4 (625-824)||(23217299-23217499)
chr4 (628-764)||(21356045-21356180)
[»] scaffold0393 (1 HSPs)
scaffold0393 (625-824)||(10634-10834)
[»] chr5 (1 HSPs)
chr5 (625-824)||(3175083-3175283)
[»] chr3 (4 HSPs)
chr3 (625-824)||(2337895-2338095)
chr3 (624-815)||(52894098-52894289)
chr3 (681-796)||(21240003-21240119)
chr3 (761-826)||(12707358-12707423)


Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 9 - 346
Target Start/End: Original strand, 40209510 - 40209842
Alignment:
Q  9 catggctgagaaatgataagcataaaaaatttgtaggtactaaaatacatgaaggatatatgctgagatatattatattgacaattgaagaatgcaatca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40209510 catggctgagaaatgataagcataaaaaatttgtaggtactaaaatacatgaaggatatatgctgagatatattatattgacaattgaagaatgcaatca 40209609  T
Q  109 atcattggtttcagtattaagtaattgttgatgtgattaaaataagagggaaagtagttgtcacttttgttagatgacaatagcttggcttggcttgcca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     |||||||||||||||    
T  40209610 atcattggtttcagtattaagtaattgttgatgtgattaaaataagagggaaagtagttgtcatttttgttagatgacaa-----tggcttggcttgcca 40209704  T
Q  209 gatgaacttatctggacacacctaaattataatcaaatataacatttttaaaaatgaattaatatgaaagagctaagtttataacaaataggaatcaaaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40209705 gatgaacttatctggacacacctaaattataatcaaatataccatttttaaaaatgaattaatatgaaagagctaagtttagaacaaataggaatcaaaa 40209804  T
Q  309 taattgtccttgcaaacctcgtgaggccacaatttata 346  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40209805 taattgtccttgcaaacctcgtgaggccacaatttata 40209842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 625 - 820
Target Start/End: Original strand, 3934373 - 3934569
Alignment:
Q  625 gagccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaat 724  Q
    |||||||||||||||| |||||||||| || |  | ||||| |  ||||| |||| |||||||||||||||||||||| ||||| |||||||||||||||    
T  3934373 gagccagacaaaaaagtttggggtggctgctattaaaaaaacttgcggaaaaaacgggaaaaaatacaaagaggtgcc-gcctaaatacgtaacaccaat 3934471  T
Q  725 acaccgaggaaatccaaaatcaacgatgacatcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactag 820  Q
     ||||||| ||| |||||| |||| ||| ||||||||||| || ||||||||||  ||||||||||||||||||||||||| ||||||||||||||||    
T  3934472 tcaccgagaaaaaccaaaaccaacaatggcatcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactag 3934569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 625 - 824
Target Start/End: Original strand, 38974751 - 38974951
Alignment:
Q  625 gagccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaat 724  Q
    |||||||||||||||| |||||||||| || |  | ||||  |  ||||| |||| |||||||||||||||||||||| ||||| ||| |||||||||||    
T  38974751 gagccagacaaaaaagtttggggtggctgctattaaaaaatcttgcggaaaaaacgggaaaaaatacaaagaggtgcc-gcctaaatatgtaacaccaat 38974849  T
Q  725 acaccgaggaaatccaaaatcaacgatgacatcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagcc 822  Q
     ||||||| ||| |||||| |||| ||| ||||||||||| || ||||||||||  ||||||||||| ||||||||||||| ||||||||||||||||||    
T  38974850 tcaccgagaaaacccaaaaccaacaatggcatcaaacaatgaggccgaagtatatactagcatagagtaagcatacccctgcctcactcccgaactagcc 38974949  T
Q  823 aa 824  Q
    ||    
T  38974950 aa 38974951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 451 - 529
Target Start/End: Original strand, 40210140 - 40210218
Alignment:
Q  451 attatgattttagagctgttgaaaattccttgcctcatgcggttcaatgaatctaaaataaatactttttgaaaatgtt 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  40210140 attatgattttagagctgttgaaaattccttgcctcatgcggttcaatgaacctaaaataaatactttttgaaaatgtt 40210218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 408 - 459
Target Start/End: Original strand, 40209904 - 40209955
Alignment:
Q  408 ggaggtgttgattatttcatattatacagtaatataactgtatattatgatt 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40209904 ggaggtgttgattatttcatattatacagtaatataactgtatattatgatt 40209955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 164; Significance: 3e-87; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 629 - 848
Target Start/End: Complemental strand, 47192845 - 47192628
Alignment:
Q  629 cagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaatacac 728  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||     
T  47192845 cagacaaaaaagcttcgggtggccgccacaacaaaaattcacggaagaaaccggaaaaaatacaaagaggtgcc-gcctatatacgtaacaccaatacaa 47192747  T
Q  729 cgaggaaatccaaaatcaacgatgacatcaaacaataagaccgaagtatactagcatagagcaagcatacccctgtctcactcccgaactagccaaaaaa 828  Q
    |||| ||| ||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  47192746 cgagaaaacccaaaactaacgatgacatcaaacaataaggccgaagtatactagcatagagcaagcatacccctgtctcactcctgaactagcca-aaaa 47192648  T
Q  829 cacagccagactgcatacac 848  Q
    ||||||||||||||| ||||    
T  47192647 cacagccagactgcaaacac 47192628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 2e-48; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 625 - 824
Target Start/End: Complemental strand, 16659939 - 16659739
Alignment:
Q  625 gagccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaat 724  Q
    |||||||||||||||| |||||||||| || |  | ||||| |  ||||| |||| |||||||||||||||||||||| ||||| |||||||||||||||    
T  16659939 gagccagacaaaaaagtttggggtggctgctattaaaaaaacttgcggaaaaaacgggaaaaaatacaaagaggtgcc-gcctaaatacgtaacaccaat 16659841  T
Q  725 acaccgaggaaatccaaaatcaacgatgacatcaaacaataagaccgaag--tatactagcatagagcaagcatacccctgtctcactcccgaactagcc 822  Q
     ||||||||||| |||||| |||| ||| ||||||||||| || ||||||  |||||||||||||||||||||||||||||  |||||||||||||||||    
T  16659840 tcaccgaggaaacccaaaaccaacaatggcatcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcatcactcccgaactagcc 16659741  T
Q  823 aa 824  Q
    ||    
T  16659740 aa 16659739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 625 - 824
Target Start/End: Complemental strand, 22015953 - 22015753
Alignment:
Q  625 gagccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaat 724  Q
    |||||||||||||||| |||||||||| || |  | ||||| |  ||||| |||  |||||||||||||||||||||   |||| |||||||||||||||    
T  22015953 gagccagacaaaaaagtttggggtggctgctattaaaaaaacttgcggaaaaaatgggaaaaaatacaaagaggtgcta-cctaaatacgtaacaccaat 22015855  T
Q  725 acaccgaggaaatccaaaatcaacgatgacatcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagcc 822  Q
     ||||||| ||| |||||| |||| ||| ||||||||||| || ||||||||||  ||||||||||||||||||||||||| |||||||| |||||||||    
T  22015854 tcaccgagaaaacccaaaaccaacaatggcatcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcctgaactagcc 22015755  T
Q  823 aa 824  Q
    ||    
T  22015754 aa 22015753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 625 - 824
Target Start/End: Complemental strand, 1669145 - 1668945
Alignment:
Q  625 gagccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaat 724  Q
    |||||||||||||||| |||||||||| || |  | ||||| |   |||| || | |||||||||||||||||||||| ||||| |||||||||||||||    
T  1669145 gagccagacaaaaaagtttggggtggctgctattaaaaaaacttgaggaaaaatcgggaaaaaatacaaagaggtgcc-gcctaaatacgtaacaccaat 1669047  T
Q  725 acaccgaggaaatccaaaatcaacgatgacatcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagcc 822  Q
     | ||||| ||| |||||| |||| ||| ||||||||||| || ||||||||||  ||||||||||||||||||||||||  |||||||| |||||||||    
T  1669046 tccccgagaaaacccaaaaccaacaatggcatcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctacctcactcctgaactagcc 1668947  T
Q  823 aa 824  Q
    ||    
T  1668946 aa 1668945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 625 - 824
Target Start/End: Original strand, 38520305 - 38520505
Alignment:
Q  625 gagccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaat 724  Q
    |||||||||||||||| |||||||||| || |  | ||||| |   |||| || | |||||||||||||||||||||| ||||| |||| ||||||||||    
T  38520305 gagccagacaaaaaagtttggggtggctgctattaaaaaaacttgaggaaaaatcgggaaaaaatacaaagaggtgcc-gcctaaatacataacaccaat 38520403  T
Q  725 acaccgaggaaatccaaaatcaacgatgacatcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagcc 822  Q
     | ||||| ||| |||||| |||| ||| ||||||||||| || ||||||||||  ||||||||||||||||||||||||  |||||||| |||||||||    
T  38520404 tccccgagaaaacccaaaaccaacaatggcatcaaacaatgaggccgaagtatatactagcatagagcaagcataccccttcctcactcctgaactagcc 38520503  T
Q  823 aa 824  Q
    ||    
T  38520504 aa 38520505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 771 - 816
Target Start/End: Original strand, 27185452 - 27185497
Alignment:
Q  771 gaagtatactagcatagagcaagcatacccctgtctcactcccgaa 816  Q
    |||||||||| |||| | ||||||||||||||| ||||||||||||    
T  27185452 gaagtatacttgcatggggcaagcatacccctgcctcactcccgaa 27185497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 1e-46; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 624 - 824
Target Start/End: Complemental strand, 45145059 - 45144858
Alignment:
Q  624 agagccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaa 723  Q
    ||||||||||||||||| |||||||||| || |  | ||||| |  ||||| |||| || ||||||||||||||||||| ||||| ||||||||||||||    
T  45145059 agagccagacaaaaaagtttggggtggctgctattaaaaaaacttgcggaaaaaacggggaaaaatacaaagaggtgcc-gcctaaatacgtaacaccaa 45144961  T
Q  724 tacaccgaggaaatccaaaatcaacgatgacatcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagc 821  Q
    | ||||||| ||| |||||| |||| ||| ||||||||||| || ||||||||||  ||||||||||||||||||||||||| |||||||||||||||||    
T  45144960 ttcaccgagaaaacccaaaaccaacaatggcatcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagc 45144861  T
Q  822 caa 824  Q
    |||    
T  45144860 caa 45144858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 625 - 824
Target Start/End: Original strand, 23217299 - 23217499
Alignment:
Q  625 gagccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaat 724  Q
    |||||||||||||||| |||||||||| || |  | ||||| |   |||| || | |||||||||||||||||||||| ||||| |||||||||||||||    
T  23217299 gagccagacaaaaaagtttggggtggctgctattaaaaaaacttgaggaaaaatcgggaaaaaatacaaagaggtgcc-gcctaaatacgtaacaccaat 23217397  T
Q  725 acaccgaggaaatccaaaatcaacgatgacatcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagcc 822  Q
     | ||||| ||| |||||| |||| ||| ||||||||||| || ||||||||||  ||||||||||||||||||||||||  |||||||| |||||||||    
T  23217398 tccccgagaaaacccaaaaccaacaatggcatcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctacctcactcctgaactagcc 23217497  T
Q  823 aa 824  Q
    ||    
T  23217498 aa 23217499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 628 - 764
Target Start/End: Complemental strand, 21356180 - 21356045
Alignment:
Q  628 ccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaataca 727  Q
    ||||||||||||| |||||||||| || |  | || || |  ||||| |||| |||||||||||||||||||||| ||||| |||| |||||||||| ||    
T  21356180 ccagacaaaaaagtttggggtggctgctattaaaataacttgcggaaaaaacgggaaaaaatacaaagaggtgcc-gcctaaatacttaacaccaattca 21356082  T
Q  728 ccgaggaaatccaaaatcaacgatgacatcaaacaat 764  Q
    ||||| ||| |||||| |||| ||| |||||||||||    
T  21356081 ccgagaaaacccaaaaccaacaatggcatcaaacaat 21356045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 95; Significance: 5e-46; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 625 - 824
Target Start/End: Original strand, 10634 - 10834
Alignment:
Q  625 gagccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaat 724  Q
    |||||||||||||||| |||||||||| || |  | ||||| |  ||||| |||| ||||||||||||||||||| || ||||| |||||||||||||||    
T  10634 gagccagacaaaaaagtttggggtggctgctattaaaaaaacttgcggaaaaaacgggaaaaaatacaaagaggttcc-gcctaaatacgtaacaccaat 10732  T
Q  725 acaccgaggaaatccaaaatcaacgatgacatcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagcc 822  Q
     ||||||| ||| |||||| |||| ||| ||||||||||| || ||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  10733 tcaccgagaaaacccaaaaccaacaatggcatcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagcc 10832  T
Q  823 aa 824  Q
    ||    
T  10833 aa 10834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 625 - 824
Target Start/End: Complemental strand, 3175283 - 3175083
Alignment:
Q  625 gagccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaat 724  Q
    |||||||||||||||| |||||||||| || |  | ||||| |  || || |||| ||||||||||||||||||| |  ||||| |||||||||||||||    
T  3175283 gagccagacaaaaaagtttggggtggctgctattaaaaaaacttgcgaaaaaaacaggaaaaaatacaaagaggttct-gcctaaatacgtaacaccaat 3175185  T
Q  725 acaccgaggaaatccaaaatcaacgatgacatcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagcc 822  Q
     ||||||| ||| |||||| |||| ||| ||||||||||| || ||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  3175184 tcaccgagaaaacccaaaaccaacaatggcatcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagcc 3175085  T
Q  823 aa 824  Q
    ||    
T  3175084 aa 3175083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 2e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 625 - 824
Target Start/End: Original strand, 2337895 - 2338095
Alignment:
Q  625 gagccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaat 724  Q
    |||||||||||||||| |||||||||| || |  | ||||| |   |||| || | |||||||||||||||||||||| ||||| |||||||||||||||    
T  2337895 gagccagacaaaaaagtttggggtggctgctattaaaaaaacttgaggaaaaatcgggaaaaaatacaaagaggtgcc-gcctaaatacgtaacaccaat 2337993  T
Q  725 acaccgaggaaatccaaaatcaacgatgacatcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagcc 822  Q
     | ||||| ||| |||||| |||| ||| ||||||||||| || ||||||||||  ||||||||||||||||||||||||  |||||||| |||||||||    
T  2337994 tccccgagaaaacccaaaaccaacaatggcatcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctacctcactcctgaactagcc 2338093  T
Q  823 aa 824  Q
    ||    
T  2338094 aa 2338095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 624 - 815
Target Start/End: Complemental strand, 52894289 - 52894098
Alignment:
Q  624 agagccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaa 723  Q
    ||||||||||||||||| |||||||||| || |  | ||||| |   |||| |||| |||||||||||||||||||||| ||||| ||||||||||||||    
T  52894289 agagccagacaaaaaagtttggggtggctgctattaaaaaaacttgtggaaaaaacgggaaaaaatacaaagaggtgcc-gcctaaatacgtaacaccaa 52894191  T
Q  724 tacaccgaggaaatccaaaatcaacgatgacatcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccga 815  Q
    | ||||||| ||| |||||| |||| ||| ||||||||| | || ||||||||||  |||||| |||||||||||||||||| |||||||||||    
T  52894190 ttcaccgagaaaacccaaaaccaacaatggcatcaaaca-tgaggccgaagtatatactagcacagagcaagcatacccctgcctcactcccga 52894098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 681 - 796
Target Start/End: Complemental strand, 21240119 - 21240003
Alignment:
Q  681 ggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaatacaccgaggaaatccaaaatcaacgatgacatcaaacaataagaccgaag--tata 778  Q
    |||||||||||||||||||||| ||||| ||||||||||||||| ||||||| ||| |||||| |||| ||| ||||||||||| |  ||||||  ||||    
T  21240119 ggaaaaaatacaaagaggtgcc-gcctaaatacgtaacaccaattcaccgagaaaacccaaaaccaacaatggcatcaaacaatgacgccgaagtatata 21240021  T
Q  779 ctagcatagagcaagcat 796  Q
    ||||||||||||||||||    
T  21240020 ctagcatagagcaagcat 21240003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 761 - 826
Target Start/End: Complemental strand, 12707423 - 12707358
Alignment:
Q  761 caataagaccgaagtatactagcatagagcaagcatacccctgtctcactcccgaactagccaaaa 826  Q
    ||||||| ||||||||||||||||| |||||||||||| ||||  ||||| || ||| ||||||||    
T  12707423 caataaggccgaagtatactagcatggagcaagcatactcctgcatcacttccaaacaagccaaaa 12707358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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