View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2942R-Insertion-2 (Length: 818)
Name: NF2942R-Insertion-2
Description: NF2942R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2942R-Insertion-2 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 733; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 733; E-Value: 0
Query Start/End: Original strand, 9 - 818
Target Start/End: Original strand, 1346752 - 1347573
Alignment:
| Q |
9 |
ctaatccactcccaaactaaaaagctttgtttttaataagtcaatacgaggagctactagattttgaaaagagtttccatgctataacaacaaagcaagt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1346752 |
ctaatccactcccaaactaaaaagctttgtttttaataagtcaatatgaggagctactagattttgaaaagagtttccatgctataacaacaaagcaagt |
1346851 |
T |
|
| Q |
109 |
ttgggaaatatgctcaaaacatatgaagcagatccaatttaacgaaaaaggttgcaaggcttaaaacaagaatttgagctgattgaattttgcaaaaatg |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1346852 |
ttgggaaatatgctcaaaacatatgaagcagatccaatttaacgaaaaaggttacaaggcttaaaacaagaatttgagctgattgaattttgcaaagatg |
1346951 |
T |
|
| Q |
209 |
aaagtattcatgattttttacgaatggatacgttggtcaatgaagcgaagaataatataacagaaaaacaagtcatgaagaaaattgtgtatacactaac |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1346952 |
aaagtattcatgattttttacgaatggatacgttggtcaatgaagcgaagaataatataacagaaaaacaagtcatgaagaaaattgtgtatacactaac |
1347051 |
T |
|
| Q |
309 |
gagatgaatcaattacgtcatagaagcaattcaagagtcaaaaagatcttatctcaaagaccttgaatgatatgcaagcatccttggagtcacatgaaat |
408 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1347052 |
gagatgaatcaattacgtcatagaagcaattcaagagtcaaaaagatcttatctcaaagaccttgaatgatttgcaagcatccttggagtcacatgaaat |
1347151 |
T |
|
| Q |
409 |
gcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaactgacaaattagggatttgtgcaaaggaaggtagaccgcaa |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1347152 |
gcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaactgacaaattagggatttgtgcaaaggaaggtagaccgcaa |
1347251 |
T |
|
| Q |
509 |
aactaaagagggaaaaagttcagaggtagaactaactcaagcaatggaacaagaggtaatggctctgtgcaaaataaagcagtgtcatgaatgcaagaaa |
608 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1347252 |
aactaaagagggcaaaagttcagaggtagaactaactcaagcaatggaactagaggtaatggctctgtgcaaaataaagcagtgtcatgaatgcaagaaa |
1347351 |
T |
|
| Q |
609 |
tatggaca------------cagccacaaattgttctattcaaccaacgtggttacgaaaaatgctaagcaatgcatatatcgcgtagttattaagtgca |
696 |
Q |
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| T |
1347352 |
tatggacataatatatatatcagcaacaaattgttctattcaagcaacgtggttacgaaaaatgctaagcaaagcatatatcgcgtagttattaagtgta |
1347451 |
T |
|
| Q |
697 |
ccctagaattgttggaccattgatttgtataaggagacaaaacctatacttttcaaaccatcaaatccaatagtagcaggtatagaaaattaagaaaaaa |
796 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1347452 |
ccctagaattgttggaccattgatttgtataaggagacaaaacctatacttttcaaaccatcaaatccaatagtagcaggtatagaaaattaagaaaaca |
1347551 |
T |
|
| Q |
797 |
ccaagtatacatctaggaaata |
818 |
Q |
| |
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||||||||| |||||||||||| |
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| T |
1347552 |
ccaagtatatatctaggaaata |
1347573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 392 - 504
Target Start/End: Complemental strand, 8675916 - 8675805
Alignment:
| Q |
392 |
ttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaactgacaaattagggatttgtgcaa |
491 |
Q |
| |
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|||||||| ||||||||| ||||| |||||| ||||||||||||||| | ||| || || |||||||||||| ||||||||| ||||||||||| || |
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| T |
8675916 |
ttggagtcgcatgaaatgttaatgagtgaaagg-tcaagtgacacaatcgaacaaacatttacagctccaacaaatctgacaaataagggatttgtgtaa |
8675818 |
T |
|
| Q |
492 |
aggaaggtagacc |
504 |
Q |
| |
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||||||||||||| |
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| T |
8675817 |
aggaaggtagacc |
8675805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 278 - 449
Target Start/End: Complemental strand, 19807748 - 19807579
Alignment:
| Q |
278 |
aagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaaagatcttatctcaaagaccttgaatg |
377 |
Q |
| |
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|||||||| ||||||||||| |||||||| || ||| ||||||||| ||| ||||||| ||||||| ||||||||| | | || ||||| ||||| |
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| T |
19807748 |
aagtcatggagaaaattgtgctaacactaacaagctgattcaattacgcattagcagcaattgaagagtc-aaaagatctgaacacagcgacctagaatg |
19807650 |
T |
|
| Q |
378 |
atatgcaagcatccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagca |
449 |
Q |
| |
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| T |
19807649 |
atttgcaatcacccttgcagtcacatgaaatgcaaataagtgaaa-agtcaagtgacacaatcgatcaagca |
19807579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 646 - 762
Target Start/End: Complemental strand, 8675798 - 8675681
Alignment:
| Q |
646 |
tggttacgaaaaatgctaagcaatgcatatatcgcgtagttattaagtgcaccctagaattgttggacc-attgatttgtataaggagacaaaacctata |
744 |
Q |
| |
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||||||| |||||||||||||| ||||||| || ||||||| |||||||||||||||||| |||| ||||||||||||||||||| || ||| || |
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| T |
8675798 |
tggttacagaaaatgctaagcaaaacatatattgcatagttatcaagtgcaccctagaattggaagaccgtttgatttgtataaggagaccaagcctgta |
8675699 |
T |
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| Q |
745 |
cttttcaaaccatcaaat |
762 |
Q |
| |
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| |||||||| |||||| |
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| T |
8675698 |
ttgttcaaaccgtcaaat |
8675681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 454 - 508
Target Start/End: Complemental strand, 9619623 - 9619569
Alignment:
| Q |
454 |
aagctccaacaaaactgacaaattagggatttgtgcaaaggaaggtagaccgcaa |
508 |
Q |
| |
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|||||||| |||| ||||||||| || ||||||||||||||| |||||||||||| |
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| T |
9619623 |
aagctccagcaaatctgacaaataagtgatttgtgcaaaggagggtagaccgcaa |
9619569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 19652915 - 19653021
Alignment:
| Q |
29 |
aaagctttgtttttaataagtcaatacgaggagctactagattttgaaaagagtttccatgctataacaacaaagcaagtttgggaaa-tatgctcaaaa |
127 |
Q |
| |
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||||||||||||| |||||||||||| ||| || ||| |||| |||| || | |||||||||||||||||||| || |||| ||| ||||| ||||| |
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| T |
19652915 |
aaagctttgttttaaataagtcaatatgagcagataccagatcttgagaaaaaattccatgctataacaacaaatgaaacttggaaaattatgcacaaaa |
19653014 |
T |
|
| Q |
128 |
catatga |
134 |
Q |
| |
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||||||| |
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| T |
19653015 |
catatga |
19653021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 85 - 263
Target Start/End: Complemental strand, 40036960 - 40036781
Alignment:
| Q |
85 |
ccatgctataacaacaaagcaagtttgggaaat-atgctcaaaacatatgaagcagatccaatttaacgaaaaaggttgcaaggcttaaaacaagaattt |
183 |
Q |
| |
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|||||||||||||| ||| |||| ||||||||| |||||||||||| ||| |||| ||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
40036960 |
ccatgctataacaataaaacaagcttgggaaattatgctcaaaacacatggagcaaatccaatttaacgaaaaaggttgcaagacttaaaacaacaattt |
40036861 |
T |
|
| Q |
184 |
gagctgattgaattttgcaaaaatgaaagtattcatgattttttacgaatggatacgttggtcaatgaagcgaagaataa |
263 |
Q |
| |
|
|||||||||||||||| |||| ||||||| ||||||||||||||||||||||||| |||||||||| || | |||||||| |
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| T |
40036860 |
gagctgattgaattttacaaagatgaaagcattcatgattttttacgaatggatatgttggtcaataaaaccaagaataa |
40036781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 80 - 351
Target Start/End: Complemental strand, 40031623 - 40031340
Alignment:
| Q |
80 |
agtttccatgctata--acaacaaagcaagtttgggaaat-atgctcaaaacatatgaagcagatccaatttaacgaaaaaggttgcaaggcttaaaaca |
176 |
Q |
| |
|
||||||||||||||| | | ||||||||| ||||||||| |||||||||||| ||| |||| ||||| ||||| ||||||||||||||| ||||||||| |
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| T |
40031623 |
agtttccatgctatataatagcaaagcaagcttgggaaattatgctcaaaacacatggagcaaatccagtttaaagaaaaaggttgcaagacttaaaaca |
40031524 |
T |
|
| Q |
177 |
agaatttgagctgattgaattttgcaaaaatgaaagtattcatgattttttacgaatggatacgttggtcaatgaagcgaagaa---------taatata |
267 |
Q |
| |
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| |||||||||| |||||||||| |||| || ||| ||||| ||||||||||| ||| ||||| ||||||||| || ||||||| ||||| | |
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| T |
40031523 |
acaatttgagcttattgaattttacaaagataaaaatattcctgattttttacaaatagatacattggtcaataaaccgaagaataacaatggtaataca |
40031424 |
T |
|
| Q |
268 |
acagaaaaacaagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaa |
351 |
Q |
| |
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|||||||||||||||||| |||| ||| || | |||||| | |||||| ||||||||| ||||| |||| ||||||||||||| |
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|
| T |
40031423 |
acagaaaaacaagtcatggagaagattatgcaaacactatcaagatgattcaattacgccatagcagcatctcaagagtcaaaa |
40031340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 682 - 753
Target Start/End: Complemental strand, 15785176 - 15785105
Alignment:
| Q |
682 |
tagttattaagtgcaccctagaattgttggaccattgatttgtataaggagacaaaacctatacttttcaaa |
753 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||| ||| |||||||||||| ||||||||| | |||||| |
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|
| T |
15785176 |
tagttatcaagtgcaccctagaattggtggaccattaattggtataaggagaccaaacctatattgttcaaa |
15785105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 395 - 538
Target Start/End: Original strand, 32241112 - 32241253
Alignment:
| Q |
395 |
gagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaa-ctgacaaattagggatttgtgcaaag |
493 |
Q |
| |
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||||||||||||||| |||||| |||||| || ||||||| |||| | ||| || || ||||||| ||||| |||||| || |||||||||||||||| |
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| T |
32241112 |
gagtcacatgaaatgtgaatgagtgaaagg-tcgagtgacataatcgaccaaacatttaaagctccttcaaaatctgacagatgagggatttgtgcaaag |
32241210 |
T |
|
| Q |
494 |
gaaggtagaccgcaaaactaaagagggaaaaagttcagaggtaga |
538 |
Q |
| |
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|| |||||||| | ||| |||||||| |||| || ||||||||| |
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| T |
32241211 |
gatggtagacctc--aaccaaagagggcaaaactttagaggtaga |
32241253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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