View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2942R-Insertion-3 (Length: 270)
Name: NF2942R-Insertion-3
Description: NF2942R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2942R-Insertion-3 |
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| [»] scaffold0263 (1 HSPs) |
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| [»] scaffold1457 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0263 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 49 - 209
Target Start/End: Complemental strand, 14572 - 14410
Alignment:
| Q |
49 |
taattaattactagctctatgtagccggtaattaaacttatcatatccactatctctatgtttaattattcgggtcatttatcaaactaaggaattgtta |
148 |
Q |
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| T |
14572 |
taattaattactagctctatgtagccggtaattaaacttataatatccactatctatatgtttaattattcgggtcatttatcaaactaagggatggcta |
14473 |
T |
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| Q |
149 |
ggtcgttccttgctgtagtttg--atacatcttctaaataagacccaaaaaagctttgattat |
209 |
Q |
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| T |
14472 |
tgacgttccttgctgtagtttgatatacatcttctaaataagacccaaaaaaactttaattat |
14410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1457 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold1457
Description:
Target: scaffold1457; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 77 - 209
Target Start/End: Original strand, 634 - 766
Alignment:
| Q |
77 |
taattaaacttatcatatccactatctctatgtttaattattcgggtcatttatcaaactaaggaattgttaggtcgttccttgctgtagtttgatacat |
176 |
Q |
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| T |
634 |
taattaaacttatcatatccactatctatatgtttaattattcgggtcatttatcaaactaagggatagctatgtcgttccttgctgtagtttgatacat |
733 |
T |
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| Q |
177 |
cttctaaataagacccaaaaaagctttgattat |
209 |
Q |
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| T |
734 |
cttctaaataagacccaaaaaagctttgattat |
766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 49 - 184
Target Start/End: Complemental strand, 92737 - 92600
Alignment:
| Q |
49 |
taattaattactagctctatgtagccggtaattaaacttatcatatccactatctctatgtttaattattcgggtcatttatcaaactaaggaattgtta |
148 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || | || |
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| T |
92737 |
taattaattactagctctatgtagcgggtaattgaacttatcatatccactatctatatgtttaattattcgggtcatttatcaaactaagggatggcta |
92638 |
T |
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| Q |
149 |
ggtcgttccttgctgtagtttg--atacatcttctaaa |
184 |
Q |
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| T |
92637 |
tgacgttccttgctgtagtttgatatacatcttctaaa |
92600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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