View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2942_high_1 (Length: 471)

Name: NF2942_high_1
Description: NF2942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2942_high_1
NF2942_high_1
[»] chr8 (23 HSPs)
chr8 (18-280)||(15853363-15853632)
chr8 (281-460)||(15853656-15853837)
chr8 (18-162)||(15860725-15860869)
chr8 (19-113)||(15867112-15867205)
chr8 (304-446)||(2518594-2518734)
chr8 (334-446)||(13171881-13171992)
chr8 (19-157)||(15846536-15846683)
chr8 (405-462)||(28300414-28300471)
chr8 (348-446)||(44681285-44681382)
chr8 (405-452)||(16252868-16252915)
chr8 (309-376)||(35643808-35643875)
chr8 (381-462)||(29520583-29520665)
chr8 (394-463)||(36143291-36143361)
chr8 (304-370)||(41971980-41972046)
chr8 (386-462)||(10080187-10080264)
chr8 (360-463)||(39760682-39760784)
chr8 (334-379)||(41444558-41444603)
chr8 (359-421)||(5908606-5908667)
chr8 (405-461)||(6510728-6510784)
chr8 (297-353)||(30559724-30559780)
chr8 (282-452)||(32043523-32043692)
chr8 (408-452)||(36069576-36069620)
chr8 (307-379)||(40813329-40813401)
[»] chr3 (22 HSPs)
chr3 (297-464)||(19736917-19737084)
chr3 (297-452)||(19757832-19757987)
chr3 (306-442)||(39600885-39601020)
chr3 (293-448)||(344902-345056)
chr3 (297-443)||(45289286-45289434)
chr3 (316-462)||(49841534-49841687)
chr3 (334-452)||(36820193-36820308)
chr3 (316-392)||(50960847-50960921)
chr3 (316-446)||(49503768-49503897)
chr3 (292-379)||(41842701-41842788)
chr3 (307-401)||(54128363-54128455)
chr3 (338-454)||(26388412-26388527)
chr3 (361-463)||(45728068-45728170)
chr3 (307-463)||(52138722-52138877)
chr3 (73-118)||(4012077-4012122)
chr3 (306-371)||(21200561-21200626)
chr3 (406-463)||(29919226-29919283)
chr3 (406-463)||(29928585-29928642)
chr3 (406-463)||(29968379-29968436)
chr3 (406-463)||(29977739-29977796)
chr3 (334-379)||(42510246-42510291)
chr3 (308-373)||(48734341-48734406)
[»] chr7 (18 HSPs)
chr7 (316-463)||(47848596-47848742)
chr7 (292-446)||(39811896-39812049)
chr7 (312-398)||(27021902-27021986)
chr7 (331-463)||(30200192-30200319)
chr7 (304-379)||(40169654-40169729)
chr7 (316-463)||(37617866-37618013)
chr7 (292-376)||(35713703-35713787)
chr7 (292-379)||(3457370-3457456)
chr7 (316-421)||(28020928-28021032)
chr7 (316-379)||(31682816-31682879)
chr7 (359-452)||(48736156-48736248)
chr7 (306-372)||(25579281-25579347)
chr7 (316-401)||(31005208-31005291)
chr7 (334-379)||(26742128-26742173)
chr7 (316-463)||(34869342-34869488)
chr7 (68-120)||(4489133-4489185)
chr7 (334-452)||(36136697-36136814)
chr7 (307-379)||(46356061-46356133)
[»] chr2 (15 HSPs)
chr2 (297-452)||(9556564-9556717)
chr2 (292-396)||(6218957-6219059)
chr2 (407-464)||(21834474-21834531)
chr2 (299-427)||(11017274-11017399)
chr2 (316-449)||(43752161-43752293)
chr2 (334-463)||(9647841-9647965)
chr2 (306-401)||(11412706-11412799)
chr2 (292-368)||(13240935-13241011)
chr2 (307-463)||(38434873-38435029)
chr2 (299-452)||(7825291-7825445)
chr2 (316-463)||(9578917-9579061)
chr2 (386-463)||(36039145-36039223)
chr2 (316-463)||(8180702-8180848)
chr2 (334-379)||(18958912-18958957)
chr2 (292-391)||(12141539-12141636)
[»] chr5 (13 HSPs)
chr5 (316-447)||(6888931-6889061)
chr5 (292-353)||(15986927-15986988)
chr5 (292-373)||(7359450-7359530)
chr5 (334-455)||(14667687-14667813)
chr5 (402-452)||(20077116-20077166)
chr5 (405-452)||(16134481-16134528)
chr5 (292-371)||(42199299-42199378)
chr5 (292-379)||(43475245-43475332)
chr5 (80-146)||(37202021-37202087)
chr5 (362-425)||(14749267-14749329)
chr5 (405-462)||(21952274-21952331)
chr5 (316-373)||(28676606-28676663)
chr5 (384-451)||(14100253-14100321)
[»] chr4 (17 HSPs)
chr4 (292-463)||(33709841-33710016)
chr4 (292-463)||(54470129-54470299)
chr4 (304-401)||(30621406-30621501)
chr4 (292-452)||(50662322-50662480)
chr4 (306-451)||(51252665-51252807)
chr4 (360-452)||(17900413-17900504)
chr4 (334-379)||(55768733-55768778)
chr4 (334-379)||(55832989-55833034)
chr4 (292-398)||(28497478-28497581)
chr4 (389-463)||(34233318-34233393)
chr4 (418-460)||(27991730-27991772)
chr4 (406-452)||(44860787-44860833)
chr4 (298-379)||(7092416-7092497)
chr4 (316-463)||(31960028-31960174)
chr4 (316-463)||(56375212-56375358)
chr4 (307-379)||(28236188-28236260)
chr4 (316-372)||(50471538-50471594)
[»] chr1 (20 HSPs)
chr1 (316-463)||(9509240-9509386)
chr1 (282-373)||(48431586-48431677)
chr1 (316-421)||(35828764-35828868)
chr1 (292-379)||(40416376-40416463)
chr1 (292-373)||(32404716-32404797)
chr1 (316-437)||(39140468-39140588)
chr1 (382-452)||(52442782-52442853)
chr1 (335-463)||(9599627-9599754)
chr1 (297-421)||(43423683-43423806)
chr1 (389-465)||(4379925-4380002)
chr1 (403-452)||(29578231-29578280)
chr1 (405-466)||(34827404-34827465)
chr1 (341-463)||(8391694-8391815)
chr1 (292-398)||(2544587-2544691)
chr1 (405-452)||(16273122-16273169)
chr1 (306-451)||(16943109-16943252)
chr1 (297-384)||(36339998-36340085)
chr1 (297-421)||(51812489-51812612)
chr1 (316-463)||(1210667-1210813)
chr1 (307-379)||(41611811-41611883)
[»] chr6 (9 HSPs)
chr6 (292-373)||(2079351-2079432)
chr6 (316-447)||(33083996-33084126)
chr6 (385-463)||(33998285-33998364)
chr6 (405-463)||(7513285-7513343)
chr6 (307-371)||(9593911-9593975)
chr6 (297-369)||(9749419-9749491)
chr6 (359-452)||(6641666-6641758)
chr6 (88-133)||(15521925-15521970)
chr6 (346-452)||(12134145-12134250)
[»] scaffold0018 (2 HSPs)
scaffold0018 (316-392)||(44082-44156)
scaffold0018 (316-452)||(31401-31536)


Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 15853363 - 15853632
Alignment:
Q  18 ccttggtattgtaccttcccataaaaaggaattatttcctgcatatcctttatgttagaacagcaaacccaattctaaagtgaacagataaataaacgca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15853363 ccttggtattgtaccttcccataaaaaggaattatttcctgcatatcctttatgttagaacagcaaacccaattctaaagtgaacagataaataaacgca 15853462  T
Q  118 caagaatacaatgattgactacggagttcagccaattgtgcctacatccctgaaaccagagta-------taattttttattatgcaatctctttattaa 210  Q
    || ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| |||||    
T  15853463 catgaatacaatgattgattacggagttcggccaattgtgcctacatccctgaaaccagagtagtggttgtaattttttattatgcaatctcttcattaa 15853562  T
Q  211 aaactctctttatcctacaagacaagcgtttagttttaaaaaactcttgtgatacgacaagcgtgtagtt 280  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15853563 aaactctcgttatccgacaagacaagcgtttagttttaaaaaactcttgtgatacgacaagcgtgtagtt 15853632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 281 - 460
Target Start/End: Original strand, 15853656 - 15853837
Alignment:
Q  281 gtctgatcatttctcattactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctg 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  15853656 gtctgatcatttctcattactataaaatctacatttcttctctctacacaccaaaaccacctaaacccatttttcacgatcttttctactataggtgctg 15853755  T
Q  381 --caccccaactctatctctaatttttcatttctaatcttatctcatctcttcttaccacacatccaacacaacttcttcat 460  Q
      ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  15853756 cccaccccaactctatctctaatttttcatttctaatcttatctcatatcttcttatcacacatccaacacaacttcttcat 15853837  T

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Target: chr8; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 15860725 - 15860869
Alignment:
Q  18 ccttggtattgtaccttcccataaaaaggaattatttcctgcatatcctttatgttagaacagcaaacccaattctaaagtgaacagataaataaacgca 117  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||  ||||||||||| || |||    
T  15860725 ccttggtattgtaccttcccataaaaaggaattctttcctgcatatcctttatgttagaacaacaaacccaactctaaagcaaacagataaattaaagca 15860824  T
Q  118 caagaatacaatgattgactacggagttcagccaattgtgcctac 162  Q
     | |||||||||| |||| |||  |||||  ||||||||| ||||    
T  15860825 taggaatacaatgcttgattacaaagttctaccaattgtgtctac 15860869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 15867112 - 15867205
Alignment:
Q  19 cttggtattgtaccttcccataaaaaggaattatttcctgcatatcctttatgttagaacagcaaacccaattctaaagtgaacagataaataaa 113  Q
    |||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||| |||||| | ||||||||||||||    
T  15867112 cttggtgttgtaccttcccataaaaaggatttttttcctgcatatcctttatgttagaaccgcaaacccaactctaaa-taaacagataaataaa 15867205  T

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Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 304 - 446
Target Start/End: Original strand, 2518594 - 2518734
Alignment:
Q  304 aaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaattt 403  Q
    ||||||||||  ||||||||||||| |   |||||||||||||||||||| ||| ||||||||||||  | |||||  ||||||| | | ||||||||||    
T  2518594 aaaatctacaagtcttctctctacataatcaaaccacctaaacctattttccaccatcttttctacttgaggtgct--accccaattttctctctaattt 2518691  T
Q  404 ttcatttctaatcttatctcatctcttcttaccacacatccaa 446  Q
     |||||||||||| ||||||||||  |||||||||||||||||    
T  2518692 gtcatttctaatcctatctcatctagtcttaccacacatccaa 2518734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 334 - 446
Target Start/End: Original strand, 13171881 - 13171992
Alignment:
Q  334 aaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaat-ttttcatttctaatcttatctcatctcttct 432  Q
    ||||||||||| | |||||| ||| ||||||||||||||| |||||   |||||||||| |||||||| || |||||||||||| |||| | |||  |||    
T  13171881 aaaccacctaagcatattttccaccatcttttctactataggtgct--tccccaactctctctctaatcttgtcatttctaatcctatcccgtctagtct 13171978  T
Q  433 taccacacatccaa 446  Q
    ||| ||||||||||    
T  13171979 tactacacatccaa 13171992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 15846536 - 15846683
Alignment:
Q  19 cttggtattgtaccttcccataaaaaggaattatttcctgc----atatcctttatgttagaacagc-----aaacccaattctaaagtgaacagataaa 109  Q
    |||||| ||| ||| ||||||||||||||||| ||||||||    |||||||||||||||||||| |     |||||| | || ||||| |||||||| |    
T  15846536 cttggtgttgcaccgtcccataaaaaggaattctttcctgcatatatatcctttatgttagaacaacaaattaaacccgactccaaagtaaacagataga 15846635  T
Q  110 taaacgcacaagaatacaatgattgactacggagttcagccaattgtg 157  Q
    ||||||| ||||||| ||||| |||| |||  |||||  |||||||||    
T  15846636 taaacgcgcaagaatgcaatgcttgattacaaagttctaccaattgtg 15846683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 405 - 462
Target Start/End: Original strand, 28300414 - 28300471
Alignment:
Q  405 tcatttctaatcttatctcatctcttcttaccacacatccaacacaacttcttcatct 462  Q
    |||||||||||||||||||||||  |||||| |||||||||||||||| || ||||||    
T  28300414 tcatttctaatcttatctcatctagtcttactacacatccaacacaacatcctcatct 28300471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 446
Target Start/End: Original strand, 44681285 - 44681382
Alignment:
Q  348 tatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaatttt-tcatttctaatcttatctcatctcttcttaccacacatccaa 446  Q
    |||||| ||| |||||||||| |||| |||||  ||| ||||| | |||||||| || ||||||||||||||||||| |||  |||||||||||||||||    
T  44681285 tattttccaccatcttttctattataggtgct--accacaactgtctctctaatgttgtcatttctaatcttatctcgtctagtcttaccacacatccaa 44681382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 405 - 452
Target Start/End: Complemental strand, 16252915 - 16252868
Alignment:
Q  405 tcatttctaatcttatctcatctcttcttaccacacatccaacacaac 452  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||||    
T  16252915 tcatttctaattttatctcatctaatcttaccacacatccaacacaac 16252868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 376
Target Start/End: Original strand, 35643808 - 35643875
Alignment:
Q  309 ctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgt 376  Q
    |||||| |||||||||||||  || ||||||||||| | |||||| ||| ||||||||||||||||||    
T  35643808 ctacatgtcttctctctacatgcccaaaccacctaagcatattttccaccatcttttctactatatgt 35643875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 462
Target Start/End: Complemental strand, 29520665 - 29520583
Alignment:
Q  381 caccccaactctatctctaatttt-tcatttctaatcttatctcatctcttcttaccacacatccaacacaacttcttcatct 462  Q
    |||||||||||| ||||||||  | |||||||||||| |||| |||||  |||||||||||||||||| |||| || ||||||    
T  29520665 caccccaactctctctctaatggtatcatttctaatcctatcccatctagtcttaccacacatccaacgcaacatcctcatct 29520583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 463
Target Start/End: Complemental strand, 36143361 - 36143291
Alignment:
Q  394 tctctaat-ttttcatttctaatcttatctcatctcttcttaccacacatccaacacaacttcttcatctc 463  Q
    |||||||| ||||| ||||||||| ||||||||||  |||||||||||  |||||||||| || |||||||    
T  36143361 tctctaatcttttcctttctaatcctatctcatctagtcttaccacacgaccaacacaacatcctcatctc 36143291  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 370
Target Start/End: Original strand, 41971980 - 41972046
Alignment:
Q  304 aaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctact 370  Q
    ||||||||||  |||||||||||||   | ||||||||||||| |||||| ||| ||||||||||||    
T  41971980 aaaatctacacgtcttctctctacatgtccaaaccacctaaacttattttccaccatcttttctact 41972046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 462
Target Start/End: Original strand, 10080187 - 10080264
Alignment:
Q  386 caactctatctctaatttt-tcatttctaatcttatctcatctcttcttaccacacatccaacacaacttcttcatct 462  Q
    ||||||| |||||||| || ||||||||||||||||||| |||  |||||||| ||| ||||| |||| || ||||||    
T  10080187 caactctctctctaatgttgtcatttctaatcttatctcgtctagtcttaccaaacacccaacgcaacatcatcatct 10080264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 463
Target Start/End: Original strand, 39760682 - 39760784
Alignment:
Q  360 tcttttctactatatgtgctgcaccccaactctatctctaatttt-tcatttctaatcttatctcatctcttcttaccacacatccaacacaacttcttc 458  Q
    |||||||||| ||| |||||  | ||||||||| |||||||| || ||||||||| || |||||  |||  || |||||||||||||||||||| || ||    
T  39760682 tcttttctacgataggtgct--aacccaactctgtctctaatgttatcatttctactcctatcttgtctaatcctaccacacatccaacacaacatcctc 39760779  T
Q  459 atctc 463  Q
    |||||    
T  39760780 atctc 39760784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 379
Target Start/End: Original strand, 41444558 - 41444603
Alignment:
Q  334 aaaccacctaaacctatttttcacgatcttttctactatatgtgct 379  Q
    |||||||||||||||| ||| ||| ||||||||||||||| |||||    
T  41444558 aaaccacctaaacctagtttccaccatcttttctactataggtgct 41444603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 421
Target Start/End: Complemental strand, 5908667 - 5908606
Alignment:
Q  359 atcttttctactatatgtgctgcaccccaactctatctctaatttt-tcatttctaatcttatc 421  Q
    ||||||||||||||| || ||  ||||||||||| |||||||| || |||||||||||||||||    
T  5908667 atcttttctactataggttct--accccaactctctctctaatgttgtcatttctaatcttatc 5908606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 461
Target Start/End: Original strand, 6510728 - 6510784
Alignment:
Q  405 tcatttctaatcttatctcatctcttcttaccacacatccaacacaacttcttcatc 461  Q
    |||||||||||| ||||||||||  |||||||||  |||||||||||| || |||||    
T  6510728 tcatttctaatcatatctcatctagtcttaccacttatccaacacaacatcatcatc 6510784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 30559780 - 30559724
Alignment:
Q  297 ttactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttt 353  Q
    |||||| ||||||||||| ||||||||||| |  || ||||||||||| ||||||||    
T  30559780 ttactacaaaatctacatgtcttctctctaaatgcccaaaccacctaagcctatttt 30559724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 452
Target Start/End: Complemental strand, 32043692 - 32043523
Alignment:
Q  282 tctgatcatttctcattactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgc 381  Q
    |||||||  ||||| |||||| || ||| |||  |||||||||||||   | |||||||| ||  ||| |||  || ||||||| ||||||| ||| |      
T  32043692 tctgatctattctccttactacaacatccacaggtcttctctctacatggccaaaccaccaaagtctagtttctaccatcttttgtactataggtgat-- 32043595  T
Q  382 accccaactctatctctaatttt-tcatttctaatcttatctcatctcttcttaccacacatccaacacaac 452  Q
    ||||||||||| |||||||| || |||||||||||  |||| | |||  |||||||||||||||||| ||||    
T  32043594 accccaactctctctctaatgttgtcatttctaattctatcccgtctagtcttaccacacatccaacgcaac 32043523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 452
Target Start/End: Complemental strand, 36069620 - 36069576
Alignment:
Q  408 tttctaatcttatctcatctcttcttaccacacatccaacacaac 452  Q
    |||||||||||||| | |||  |||||||||||||||||||||||    
T  36069620 tttctaatcttatcccgtctagtcttaccacacatccaacacaac 36069576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 379
Target Start/End: Complemental strand, 40813401 - 40813329
Alignment:
Q  307 atctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgct 379  Q
    |||||||  |||||||||||||  || |||||| |||||||||||||  || | ||||||||||||| |||||    
T  40813401 atctacagatcttctctctacatgcccaaaccatctaaacctattttctaccaacttttctactataggtgct 40813329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 297 - 464
Target Start/End: Complemental strand, 19737084 - 19736917
Alignment:
Q  297 ttactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatct 396  Q
    |||||| || |||||||  |||||||||| ||  |  ||||||||||||||||||||  || ||||||||||||||| ||||||| |||||||||| |||    
T  19737084 ttactacaacatctacaggtcttctctctgcatgctcaaaccacctaaacctattttctaccatcttttctactataggtgctgc-ccccaactctctct 19736986  T
Q  397 ctaat-ttttcatttctaatcttatctcatctcttcttaccacacatccaacacaacttcttcatctca 464  Q
    |||||  ||||| |||||||| |||| | |||  ||||||||| ||||||||||||| || ||||||||    
T  19736985 ctaatgatttcacttctaatcgtatcccgtctagtcttaccactcatccaacacaacatcatcatctca 19736917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 297 - 452
Target Start/End: Complemental strand, 19757987 - 19757832
Alignment:
Q  297 ttactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatct 396  Q
    |||||| || |||||||  |||||||||| ||  |  ||||||||||||||||||||  || ||||||||||||||| ||||||| |||||||||| |||    
T  19757987 ttactacaacatctacaggtcttctctctgcatgctcaaaccacctaaacctattttctaccatcttttctactataggtgctgc-ccccaactctctct 19757889  T
Q  397 ctaat-ttttcatttctaatcttatctcatctcttcttaccacacatccaacacaac 452  Q
    |||||  ||||| |||||||| |||||| | |  ||||||||| |||||||||||||    
T  19757888 ctaatgatttcacttctaatcgtatctcgtgtagtcttaccactcatccaacacaac 19757832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 306 - 442
Target Start/End: Original strand, 39600885 - 39601020
Alignment:
Q  306 aatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaat-ttt 404  Q
    ||||||||  |||||||| ||||  |||||||||||||| | | |||| ||| ||||||||||||||| || ||  ||||||||||| |||||||| ||     
T  39600885 aatctacaggtcttctctttacatgccaaaaccacctaagcttgttttccaccatcttttctactataggtact--accccaactctctctctaatgttg 39600982  T
Q  405 tcatttctaatcttatctcatctcttcttaccacacat 442  Q
    ||||||||||||||||| |||||  |||||||||||||    
T  39600983 tcatttctaatcttatcccatctagtcttaccacacat 39601020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 448
Target Start/End: Original strand, 344902 - 345056
Alignment:
Q  293 ctcattactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactct 392  Q
    |||||||||| ||||| ||||  || ||||||||||   | |||| || ||| ||||||||  |  ||||||||||||||| |||||  |||||||||||    
T  344902 ctcattactaaaaaatttacaggtcctctctctacatgaccaaactacttaagcctattttctaacatcttttctactataagtgct--accccaactct 344999  T
Q  393 atctctaatttt-tcatttctaatcttatctcatctcttcttaccacacatccaaca 448  Q
     |||||||| |  |||||||||||| |||||| |||  |||||||||| ||||||||    
T  345000 ctctctaatgtcatcatttctaatcctatctcgtctagtcttaccacaaatccaaca 345056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 443
Target Start/End: Original strand, 45289286 - 45289434
Alignment:
Q  297 ttactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctact--atatgtgctgcaccccaa--ctct 392  Q
    |||||| ||||||||||  | ||||||||||   || ||||||||||| |||||||| ||| ||||||||||||  ||| |||||  |||||||  ||||    
T  45289286 ttactacaaaatctacaagtgttctctctacgtgcccaaaccacctaagcctattttccaccatcttttctactgaataggtgct--accccaactctct 45289383  T
Q  393 atctctaatttttcatttctaatcttatctcatctcttcttaccacacatc 443  Q
     |||||||| | ||||||||||||||||| | |||  ||||| ||||||||    
T  45289384 ctctctaatgtgtcatttctaatcttatcccgtctagtcttatcacacatc 45289434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 462
Target Start/End: Complemental strand, 49841687 - 49841534
Alignment:
Q  316 tcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgc----accccaactctatctc--taatttt-tcat 408  Q
    |||||||||||||| || ||||||||| |  ||| ||| ||| |||||||||| |||| ||||| |    ||||||||||| ||||  |||| || ||||    
T  49841687 tcttctctctacacgcccaaaccaccttagtctagtttccaccatcttttctaatataggtgctacggctaccccaactctctctcactaatgttgtcat 49841588  T
Q  409 ttctaatcttatctcatctcttcttaccacacatccaacacaacttcttcatct 462  Q
    ||||||||||| ||| |||  |||||| |||||||||||||||| || ||||||    
T  49841587 ttctaatcttacctcgtctagtcttactacacatccaacacaacatcctcatct 49841534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 334 - 452
Target Start/End: Original strand, 36820193 - 36820308
Alignment:
Q  334 aaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaatttt-tcatttctaatcttatctcatctcttct 432  Q
    ||||||||||| |||| ||| ||| |||||| ||| |||| |||||  |||||||||||  ||||||| |  |||||||||||| |||||| |||  |||    
T  36820193 aaaccacctaagcctagtttccaccatctttgctaatataggtgct--accccaactct--ctctaatgtcgtcatttctaatcctatctcgtctagtct 36820288  T
Q  433 taccacacatccaacacaac 452  Q
    ||||||||||||||| ||||    
T  36820289 taccacacatccaacgcaac 36820308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 392
Target Start/End: Original strand, 50960847 - 50960921
Alignment:
Q  316 tcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactct 392  Q
    |||||||||||||  || ||||||||||| ||||||||  || ||||||||||||||| |||||  |||||||||||    
T  50960847 tcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgct--accccaactct 50960921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 446
Target Start/End: Original strand, 49503768 - 49503897
Alignment:
Q  316 tcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaat-ttttcatttctaa 414  Q
    |||||||||||||  || ||||||||||| ||||||||  || ||||||||||||||| |||||  |||  |||||| ||||||||  | ||||| | ||    
T  49503768 tcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgct--acctgaactctctctctaatggtgtcattcccaa 49503865  T
Q  415 tcttatctcatctcttcttaccacacatccaa 446  Q
    || |||||| |||  ||||||||| |||||||    
T  49503866 tcctatctcgtctagtcttaccactcatccaa 49503897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 379
Target Start/End: Original strand, 41842701 - 41842788
Alignment:
Q  292 tctcattactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgct 379  Q
    ||||||||||| | |||||||   ||||||||||||| ||| |||||||||||  ||  ||| ||| ||||||||||||||| |||||    
T  41842701 tctcattactacagaatctaccgctcttctctctacatacccaaaccacctaagactggtttccaccatcttttctactataggtgct 41842788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 401
Target Start/End: Complemental strand, 54128455 - 54128363
Alignment:
Q  307 atctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaat 401  Q
    |||||||  |||| ||||||||  || ||||||||||| ||||||||  || ||||||||||||||| |||||  |||||||| || ||||||||    
T  54128455 atctacaggtcttttctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgct--accccaacactctctctaat 54128363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 454
Target Start/End: Complemental strand, 26388527 - 26388412
Alignment:
Q  338 cacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaat-ttttcatttctaatcttatctcatctcttcttacc 436  Q
    ||||||||||||||||  || |||||||||| |||| ||||  || | ||||||||| ||||||  ||| |||||||||| ||| | ||||  ||| |||    
T  26388527 cacctaaacctattttctaccatcttttctattataggtgc--catctcaactctatgtctaatggtttaatttctaatcatatataatctagtctaacc 26388430  T
Q  437 acacatccaacacaactt 454  Q
    ||||||||||| ||||||    
T  26388429 acacatccaacgcaactt 26388412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 463
Target Start/End: Complemental strand, 45728170 - 45728068
Alignment:
Q  361 cttttctactatatgtgctgcaccccaactctatctctaatt--tttcatttctaatcttatctcatctcttcttaccacacatccaacacaacttcttc 458  Q
    |||||||||||||||||||  ||||| ||||| ||||||| |  | |||||||||||| ||| || |||| ||||||||| |||||| | |||| || ||    
T  45728170 cttttctactatatgtgct--acccccactctctctctaaatgatgtcatttctaatcctatttcgtctcgtcttaccactcatccagcgcaacatcctc 45728073  T
Q  459 atctc 463  Q
    |||||    
T  45728072 atctc 45728068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 463
Target Start/End: Complemental strand, 52138877 - 52138722
Alignment:
Q  307 atctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaat-tttt 405  Q
    |||||||  |||||||||||||  || |||||| |||| ||||||||  || | ||||||||||||| |||||  ||||| ||||| ||||||||  | |    
T  52138877 atctacaggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgct--acccccactctctctctaatggtgt 52138780  T
Q  406 catttctaatcttatctcatctcttcttaccacacatccaacacaacttcttcatctc 463  Q
    |||| |||||| ||||   |||  ||||||||| |||||||| |||| || |||||||    
T  52138779 cattcctaatcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctc 52138722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 4012077 - 4012122
Alignment:
Q  73 tagaacagcaaacccaattctaaagtgaacagataaataaacgcac 118  Q
    ||||||||||||||| | ||||||||  ||||||||||||||||||    
T  4012077 tagaacagcaaacccgactctaaagtagacagataaataaacgcac 4012122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 371
Target Start/End: Complemental strand, 21200626 - 21200561
Alignment:
Q  306 aatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctacta 371  Q
    ||||||||| |||||||||||||  || |||||||||||  ||| ||| ||| |||||||||||||    
T  21200626 aatctacatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttctacta 21200561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 463
Target Start/End: Complemental strand, 29919283 - 29919226
Alignment:
Q  406 catttctaatcttatctcatctcttcttaccacacatccaacacaacttcttcatctc 463  Q
    ||||||||||| |||||| |||  || |||||||||||||||||||| || |||||||    
T  29919283 catttctaatcatatctcgtctaatcgtaccacacatccaacacaacatcgtcatctc 29919226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 463
Target Start/End: Original strand, 29928585 - 29928642
Alignment:
Q  406 catttctaatcttatctcatctcttcttaccacacatccaacacaacttcttcatctc 463  Q
    ||||||||||| |||||| |||  || |||||||||||||||||||| || |||||||    
T  29928585 catttctaatcatatctcgtctaatcgtaccacacatccaacacaacatcgtcatctc 29928642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 463
Target Start/End: Complemental strand, 29968436 - 29968379
Alignment:
Q  406 catttctaatcttatctcatctcttcttaccacacatccaacacaacttcttcatctc 463  Q
    ||||||||||| |||||| |||  || |||||||||||||||||||| || |||||||    
T  29968436 catttctaatcatatctcgtctaatcgtaccacacatccaacacaacatcgtcatctc 29968379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 463
Target Start/End: Original strand, 29977739 - 29977796
Alignment:
Q  406 catttctaatcttatctcatctcttcttaccacacatccaacacaacttcttcatctc 463  Q
    ||||||||||| |||||| |||  || |||||||||||||||||||| || |||||||    
T  29977739 catttctaatcatatctcgtctaatcgtaccacacatccaacacaacatcgtcatctc 29977796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 379
Target Start/End: Original strand, 42510246 - 42510291
Alignment:
Q  334 aaaccacctaaacctatttttcacgatcttttctactatatgtgct 379  Q
    ||||||||||| |||||||| ||| ||||||||||||||| |||||    
T  42510246 aaaccacctaagcctattttccactatcttttctactataggtgct 42510291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 373
Target Start/End: Original strand, 48734341 - 48734406
Alignment:
Q  308 tctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactata 373  Q
    |||||| ||||||||||||||  || ||||||||||| ||||||||  || |||| ||||||||||    
T  48734341 tctacagttcttctctctacatgcccaaaccacctaagcctattttctaccatctgttctactata 48734406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 316 - 463
Target Start/End: Complemental strand, 47848742 - 47848596
Alignment:
Q  316 tcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaat-ttttcatttctaa 414  Q
    ||||||||| |||  || ||||||||||| |||||||| ||| ||||||||||||||| | |||  ||||||||||| |||||||| || ||| |||| |    
T  47848742 tcttctctcgacatgcccaaaccacctaagcctattttccaccatcttttctactataggcgct--accccaactctctctctaatgttatcacttctga 47848645  T
Q  415 tcttatctcatctcttcttaccacacatccaacacaacttcttcatctc 463  Q
    || |||| | |||  ||||||||||||||||||||||| || |||||||    
T  47848644 tcctatcccgtctagtcttaccacacatccaacacaacatcctcatctc 47848596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 292 - 446
Target Start/End: Complemental strand, 39812049 - 39811896
Alignment:
Q  292 tctcattactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactc 391  Q
    |||| |||||||| ||||||||| |||||||||||||  || |||| |||||| || | ||||||| || |||||||  ||| ||||||  |||||||||    
T  39812049 tctccttactatagaatctacatctcttctctctacatgcccaaactacctaagccgagttttcaccattttttctatgataggtgctg--ccccaactc 39811952  T
Q  392 tatctctaat-ttttcatttctaatcttatctcatctcttcttaccacacatccaa 446  Q
    | |||||||| || |||||||||||| |||| | |||  |||||||||||||||||    
T  39811951 tctctctaatgttgtcatttctaatcctatcacgtctagtcttaccacacatccaa 39811896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 398
Target Start/End: Original strand, 27021902 - 27021986
Alignment:
Q  312 catttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctct 398  Q
    |||||||||||||||||  || ||||||||||| |||| ||||||| | ||||||||||||| |||||  ||||||||||| |||||    
T  27021902 catttcttctctctacatgcccaaaccacctaagcctagttttcaccaacttttctactataggtgct--accccaactctctctct 27021986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 463
Target Start/End: Original strand, 30200192 - 30200319
Alignment:
Q  331 ccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaatttt-tcatttctaatcttatctcatctct 429  Q
    |||||| ||||||| |||| ||| ||| ||||||||||||||| ||| |  |||| ||||||    ||||| || |||||||||||| |||| |||||      
T  30200192 ccaaaatcacctaagcctagtttccaccatcttttctactataggtgtt--accctaactct----ctaatgttgtcatttctaatcatatcccatctaa 30200285  T
Q  430 tcttaccacacatccaacacaacttcttcatctc 463  Q
    ||||||||||||||||||||||| || |||||||    
T  30200286 tcttaccacacatccaacacaacatcctcatctc 30200319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 379
Target Start/End: Complemental strand, 40169729 - 40169654
Alignment:
Q  304 aaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgct 379  Q
    ||||||||| | |||| ||||||||  || ||||||||||| |||||||| ||| ||||||||||||||| |||||    
T  40169729 aaaatctacgtgtcttatctctacatgcccaaaccacctaagcctattttccaccatcttttctactataagtgct 40169654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 463
Target Start/End: Complemental strand, 37618013 - 37617866
Alignment:
Q  316 tcttctctctacacaccaaaaccacctaaacctatttttc-acgatcttttctactatatgtgctgcaccccaactctatctctaat-ttttcatttcta 413  Q
    |||||||||||||  || |||||| |||| |||||||||| || | ||||||||||||| |||||  ||||| ||||| ||||||||  | ||||| |||    
T  37618013 tcttctctctacatgcccaaaccatctaagcctatttttctaccaacttttctactataggtgct--acccccactctctctctaatggtgtcattccta 37617916  T
Q  414 atcttatctcatctcttcttaccacacatccaacacaacttcttcatctc 463  Q
    ||| |||||  |||  ||||||||| |||||||| |||| || |||||||    
T  37617915 atcctatcttgtctagtcttaccactcatccaacgcaacatcctcatctc 37617866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 376
Target Start/End: Complemental strand, 35713787 - 35713703
Alignment:
Q  292 tctcattactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgt 376  Q
    |||| |||||| ||||| ||||  |||||||||||||  || ||||||||||| |||||||| ||| || ||||| |||||||||    
T  35713787 tctccttactacaaaatgtacaagtcttctctctacatgcccaaaccacctaagcctattttccaccattttttcaactatatgt 35713703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 379
Target Start/End: Complemental strand, 3457456 - 3457370
Alignment:
Q  292 tctcattactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgct 379  Q
    ||||||||||| || |||||||| ||||||||||  |  || ||||||||||||||||  ||||||  |||||||||||||| |||||    
T  3457456 tctcattactacaacatctacatgtcttctctctgaatgcccaaaccacctaaaccta-gtttcacagtcttttctactataagtgct 3457370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 421
Target Start/End: Complemental strand, 28021032 - 28020928
Alignment:
Q  316 tcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaat-ttttcatttctaa 414  Q
    |||||||||||||  || ||||||||||| || | ||| ||| ||||||||||| ||| |||||  ||||||||||| |||||||| || ||||||| ||    
T  28021032 tcttctctctacatgcccaaaccacctaagccaagtttccaccatcttttctacgataagtgct--accccaactctttctctaatgttatcatttcgaa 28020935  T
Q  415 tcttatc 421  Q
    || ||||    
T  28020934 tcatatc 28020928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 31682816 - 31682879
Alignment:
Q  316 tcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgct 379  Q
    ||||||||||||| ||| |||||| |||| ||||||||  || | |||||||||||||||||||    
T  31682816 tcttctctctacatacccaaaccatctaagcctattttctaccaacttttctactatatgtgct 31682879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 452
Target Start/End: Original strand, 48736156 - 48736248
Alignment:
Q  359 atcttttctactatatgtgctgcaccccaactctatctctaatttt-tcatttctaatcttatctcatctcttcttaccacacatccaacacaac 452  Q
    |||||||||||| || |||||  ||||||||||| ||| |||| |  ||||||||||| |||||||||||  ||||||||||||| |||| ||||    
T  48736156 atcttttctactgtaggtgct--accccaactctctctataatgtcgtcatttctaattttatctcatctagtcttaccacacattcaacgcaac 48736248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 372
Target Start/End: Original strand, 25579281 - 25579347
Alignment:
Q  306 aatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactat 372  Q
    ||||||||| |||||||||||||  || ||||||||||| |||||||| ||| || |||||| ||||    
T  25579281 aatctacatgtcttctctctacatccccaaaccacctaagcctattttccaccattttttctgctat 25579347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 401
Target Start/End: Complemental strand, 31005291 - 31005208
Alignment:
Q  316 tcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaat 401  Q
    |||||||||||||  || |||||| |||||||||||||  || | ||||||||||||| |||||  ||||| ||||| ||||||||    
T  31005291 tcttctctctacatgcccaaaccatctaaacctattttctaccaacttttctactataggtgct--acccccactctctctctaat 31005208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 379
Target Start/End: Original strand, 26742128 - 26742173
Alignment:
Q  334 aaaccacctaaacctatttttcacgatcttttctactatatgtgct 379  Q
    ||||||||||| |||||||| ||| ||||||||||||||| |||||    
T  26742128 aaaccacctaatcctattttccaccatcttttctactataggtgct 26742173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 463
Target Start/End: Complemental strand, 34869488 - 34869342
Alignment:
Q  316 tcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaat-ttttcatttctaa 414  Q
    |||||||||||||  || |||||| |||| ||||||||  || | ||||||||||||| |||||  ||||| ||||| ||||||||  | ||||| ||||    
T  34869488 tcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgct--acccccactctctctctaatggtgtcattcctaa 34869391  T
Q  415 tcttatctcatctcttcttaccacacatccaacacaacttcttcatctc 463  Q
    || ||||   |||  ||||||||| |||||||| |||| || |||||||    
T  34869390 tcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctc 34869342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 4489133 - 4489185
Alignment:
Q  68 tatgttagaacagcaaacccaattctaaagtgaacagataaataaacgcacaa 120  Q
    ||||||||| |||||||||   ||||||||| |||| ||||||||||||||||    
T  4489133 tatgttagaccagcaaacctggttctaaagtaaacatataaataaacgcacaa 4489185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 452
Target Start/End: Complemental strand, 36136814 - 36136697
Alignment:
Q  334 aaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaatttt-tcatttctaatcttatctcatctcttct 432  Q
    |||| ||||||  |||||||  || ||||||||||||||| |||||  ||||||||||| ||||||||  | ||||| |||| | |||| | |||  |||    
T  36136814 aaacaacctaagactattttctaccatcttttctactataggtgct--accccaactctctctctaatggtgtcattcctaaacctatcccttctagtct 36136717  T
Q  433 taccacacatccaacacaac 452  Q
    |||||| |||||||||||||    
T  36136716 taccacccatccaacacaac 36136697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 46356061 - 46356133
Alignment:
Q  307 atctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgct 379  Q
    |||||| | |||||||||||||  || |||||| |||||||||||||  || | ||||||||||||| |||||    
T  46356061 atctacgtgtcttctctctacatgcccaaaccatctaaacctattttctaccaacttttctactataggtgct 46356133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 452
Target Start/End: Original strand, 9556564 - 9556717
Alignment:
Q  297 ttactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatct 396  Q
    |||||| | ||||||| | |||||||||||||  || ||||||||||| |||||||| ||| || |||||||||||| ||| |  ||||||||| | |||    
T  9556564 ttactacagaatctacttgtcttctctctacatgcctaaaccacctaagcctattttccaccat-ttttctactataagtgtt--accccaactttctct 9556660  T
Q  397 ctaatttt-tcatttctaatcttatctcatctcttcttaccacacatccaacacaac 452  Q
    ||||| || |||||||||||| |||| | |||  |||||||||||||||||||||||    
T  9556661 ctaatgttgtcatttctaatcatatcccgtctaatcttaccacacatccaacacaac 9556717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 396
Target Start/End: Complemental strand, 6219059 - 6218957
Alignment:
Q  292 tctcattactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactc 391  Q
    |||| |||||| | ||||||||| ||| |||||||||   | ||||||||||| |||||| | ||| ||||||||||||||| |||||  ||||||||||    
T  6219059 tctccttactacataatctacatatctcctctctacatgtccaaaccacctaagcctattatccactatcttttctactataagtgct--accccaactc 6218962  T
Q  392 tatct 396  Q
    |||||    
T  6218961 tatct 6218957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 407 - 464
Target Start/End: Complemental strand, 21834531 - 21834474
Alignment:
Q  407 atttctaatcttatctcatctcttcttaccacacatccaacacaacttcttcatctca 464  Q
    |||||||||||||||||||||  |||||||||||||||||| |||| |||| ||||||    
T  21834531 atttctaatcttatctcatctagtcttaccacacatccaactcaacatctttatctca 21834474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 427
Target Start/End: Complemental strand, 11017399 - 11017274
Alignment:
Q  299 actataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctct 398  Q
    |||| |||||||||   ||||||||| ||| ||| ||||||| ||| || | ||| ||||||||||||||||||| |||||  ||| ||||||  ||| |    
T  11017399 actacaaaatctacgggtcttctctccacatacccaaaccacttaagccgagtttccacgatcttttctactataggtgct--acctcaactc--tcttt 11017304  T
Q  399 aat-ttttcatttctaatcttatctcatct 427  Q
    ||| |||||||| |||||||||||||||||    
T  11017303 aatattttcattcctaatcttatctcatct 11017274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 449
Target Start/End: Original strand, 43752161 - 43752293
Alignment:
Q  316 tcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaatttt-tcatttctaa 414  Q
    |||||||||||||   | ||| ||||||| ||||||||  || | ||||||||||||| |||||  ||||||||||| |||||||| |  ||| ||||||    
T  43752161 tcttctctctacatgtccaaatcacctaagcctattttctaccaccttttctactataggtgct--accccaactctctctctaatatggtcagttctaa 43752258  T
Q  415 tcttatctcatctcttcttaccacacatccaacac 449  Q
    ||||||| |||||  | ||||| ||||||||||||    
T  43752259 tcttatcccatctggttttaccgcacatccaacac 43752293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 463
Target Start/End: Original strand, 9647841 - 9647965
Alignment:
Q  334 aaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaattttt-catttctaatcttatctcatctcttct 432  Q
    |||||||||||| ||| ||| ||| ||| ||||||||||| || ||||  |||||||||||    ||| ||  |||||||||||||||| |||||  |||    
T  9647841 aaaccacctaaagctagtttccaccatcatttctactataggtactgc--cccaactctat----aatgttgacatttctaatcttatcacatctagtct 9647934  T
Q  433 taccacacatccaacacaacttcttcatctc 463  Q
    ||||||||||||||| |||| || |||||||    
T  9647935 taccacacatccaacgcaacatcctcatctc 9647965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 401
Target Start/End: Complemental strand, 11412799 - 11412706
Alignment:
Q  306 aatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaat 401  Q
    |||||||| ||||| |||||| |  || |||| |||||| |||||||| ||| || |||||||||||| |||||  ||||||||||| ||||||||    
T  11412799 aatctacagttcttatctctaaatgcccaaacaacctaagcctattttccaccatattttctactataggtgct--accccaactctctctctaat 11412706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 368
Target Start/End: Original strand, 13240935 - 13241011
Alignment:
Q  292 tctcattactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttcta 368  Q
    |||| |||||| | ||||||||| |||||||||||||  || ||||||||||| |||| ||| ||| ||||||||||    
T  13240935 tctccttactaaagaatctacatgtcttctctctacatgcccaaaccacctaagcctagtttccaccatcttttcta 13241011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 463
Target Start/End: Complemental strand, 38435029 - 38434873
Alignment:
Q  307 atctacatttcttctctctacacaccaaaaccacctaaac-ctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaatttt- 404  Q
    |||||||  |||||||| ||||  || |||||||| |||  ||| ||| ||| ||||||||||||||| |||||  ||||||| ||| |||||||| ||     
T  38435029 atctacaagtcttctctttacatgcccaaaccacccaaagtctagtttccaccatcttttctactataggtgct--accccaattctctctctaatgttg 38434932  T
Q  405 tcatttctaatcttatctcatctcttcttaccacacatccaacacaacttcttcatctc 463  Q
    |||||||||||||| |||| |||  | ||||||| |||||||  |||| || |||||||    
T  38434931 tcatttctaatcttctctcgtctagttttaccacgcatccaatgcaacatcctcatctc 38434873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 452
Target Start/End: Complemental strand, 7825445 - 7825291
Alignment:
Q  299 actataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctct 398  Q
    |||||| ||||||||| |||||||||||||  |  |||||| |||| | |||||||||| || ||| | |||||| ||||| | ||   ||||| |||||    
T  7825445 actatagaatctacatgtcttctctctacatgctcaaaccaactaagcttatttttcaccatatttacaactataggtgctactccaacactctctctct 7825346  T
Q  399 aat-ttttcatttctaatcttatctcatctcttcttaccacacatccaacacaac 452  Q
    |||  | |||||||||||| ||||   |||  |||||||||||||||||| ||||    
T  7825345 aatagtgtcatttctaatcatatccagtctagtcttaccacacatccaacgcaac 7825291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 463
Target Start/End: Original strand, 9578917 - 9579061
Alignment:
Q  316 tcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaatttt-tcatttctaa 414  Q
    |||||||||||||   | |||||||||||  ||||||| ||  |||||| ||||||||||||   ||||||||||||  ||||||  || |||||| |||    
T  9578917 tcttctctctacatgtccaaaccacctaagtctattttacatcatctttactactatatgtgt--caccccaactct--ctctaacattgtcatttttaa 9579012  T
Q  415 tcttatctcatctcttcttaccacacatccaacacaacttcttcatctc 463  Q
    |  ||||  |||| ||||||||||||||||||| |||| |||| |||||    
T  9579013 ttctatcatatctattcttaccacacatccaacgcaacatctttatctc 9579061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 463
Target Start/End: Complemental strand, 36039223 - 36039145
Alignment:
Q  386 caactctatctctaatttt-tcatttctaatcttatctcatctcttcttaccacacatccaacacaacttcttcatctc 463  Q
    ||||||| |||||||| || |||||| |||| ||| |||||||   ||| |||||||||||||||||| ||||||||||    
T  36039223 caactctttctctaatgttgtcatttataattttaactcatctaaacttgccacacatccaacacaacatcttcatctc 36039145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 463
Target Start/End: Complemental strand, 8180848 - 8180702
Alignment:
Q  316 tcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaatttt-tcatttctaa 414  Q
    |||||||||||||  || |||||| |||| | ||||||  || | ||||||||||||| |||||  ||||| ||||| ||||||||  | ||||| ||||    
T  8180848 tcttctctctacatgcccaaaccatctaagcttattttctaccaacttttctactataggtgct--acccccactctctctctaatggtgtcattcctaa 8180751  T
Q  415 tcttatctcatctcttcttaccacacatccaacacaacttcttcatctc 463  Q
    || ||||   |||  ||||||||| ||||||||||||| || |||||||    
T  8180750 tcctatcatgtctagtcttaccactcatccaacacaacatcctcatctc 8180702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 379
Target Start/End: Complemental strand, 18958957 - 18958912
Alignment:
Q  334 aaaccacctaaacctatttttcacgatcttttctactatatgtgct 379  Q
    ||||||||||| |||||||| ||| ||||||||||||||| |||||    
T  18958957 aaaccacctaagcctattttccaccatcttttctactataggtgct 18958912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 391
Target Start/End: Complemental strand, 12141636 - 12141539
Alignment:
Q  292 tctcattactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactc 391  Q
    |||| |||||| | ||||||||  |||||| |||||   || ||||||||||| ||| |||| ||| ||||||||||||||| |||||  ||||||||||    
T  12141636 tctccttactagagaatctacaggtcttctttctacgtgcccaaaccacctaagcctcttttccaccatcttttctactataggtgct--accccaactc 12141539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 316 - 447
Target Start/End: Complemental strand, 6889061 - 6888931
Alignment:
Q  316 tcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaatttt-tcatttctaa 414  Q
    |||||||||||||   | ||||||| ||| |||||||| ||| ||||||||  ||||| |||||  ||||||||||| ||| |||| || ||||||||||    
T  6889061 tcttctctctacatgtccaaaccacttaagcctattttccaccatcttttcctctatacgtgct--accccaactctttctgtaatattgtcatttctaa 6888964  T
Q  415 tcttatctcatctcttcttaccacacatccaac 447  Q
    || ||||||||||  ||||||||||||||||||    
T  6888963 tcatatctcatctagtcttaccacacatccaac 6888931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 15986927 - 15986988
Alignment:
Q  292 tctcattactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttt 353  Q
    |||| |||||||| ||||||||| |||||||||||||| || ||||||||||||||||||||    
T  15986927 tctccttactatagaatctacatatcttctctctacacgcccaaaccacctaaacctatttt 15986988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 373
Target Start/End: Original strand, 7359450 - 7359530
Alignment:
Q  292 tctcattactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactata 373  Q
    |||| |||||| | ||||||||| |||||||||||||  ||||| ||||||||||||||||| ||| || ||||||||||||    
T  7359450 tctccttactacagaatctacatatcttctctctacatgccaaa-ccacctaaacctattttccaccatattttctactata 7359530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 455
Target Start/End: Complemental strand, 14667813 - 14667687
Alignment:
Q  334 aaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaa------ctctatctctaat-ttttcatttctaatcttatctcatc 426  Q
    |||||||||||  ||||||| ||| ||||||||||||||| |||||  |||||||      |||| |||||||| || |||||||||||  || ||||||    
T  14667813 aaaccacctaagtctattttccaccatcttttctactataggtgct--accccaactctctctctctctctaatattgtcatttctaattctacctcatc 14667716  T
Q  427 tcttcttaccacacatccaacacaacttc 455  Q
    |  ||||| ||||||||||||||||||||    
T  14667715 tagtcttatcacacatccaacacaacttc 14667687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 452
Target Start/End: Original strand, 20077116 - 20077166
Alignment:
Q  402 ttttcatttctaatcttatctcatctcttcttaccacacatccaacacaac 452  Q
    |||||||||||||||| |||||||||  | |||||||||||||||||||||    
T  20077116 ttttcatttctaatctcatctcatctaatgttaccacacatccaacacaac 20077166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 452
Target Start/End: Original strand, 16134481 - 16134528
Alignment:
Q  405 tcatttctaatcttatctcatctcttcttaccacacatccaacacaac 452  Q
    ||||||||||| |||||||||||  |||||||| ||||||||||||||    
T  16134481 tcatttctaattttatctcatctagtcttaccatacatccaacacaac 16134528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 371
Target Start/End: Complemental strand, 42199378 - 42199299
Alignment:
Q  292 tctcattactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctacta 371  Q
    |||| |||||| | ||||||||| |||||||||||||  || |||||||||||  ||| ||| ||| |||||||||||||    
T  42199378 tctccttactacagaatctacatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttctacta 42199299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 379
Target Start/End: Complemental strand, 43475332 - 43475245
Alignment:
Q  292 tctcattactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgct 379  Q
    |||| |||||| || |||||||  ||||||||||  | ||| ||||||||||| |||| ||| ||| ||||||||||||||| |||||    
T  43475332 tctccttactacaacatctacaggtcttctctctgaatacccaaaccacctaagcctagtttccaccatcttttctactataggtgct 43475245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 37202087 - 37202021
Alignment:
Q  80 gcaaacccaattctaaagtgaacagataaataaacgcacaagaatacaatgattgactacggagttc 146  Q
    |||||||| | |||||||| | || ||||||||||||||||||| |||| |||||| ||| ||||||    
T  37202087 gcaaacccgactctaaagtaatcaaataaataaacgcacaagaacacaaagattgattacagagttc 37202021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 425
Target Start/End: Complemental strand, 14749329 - 14749267
Alignment:
Q  362 ttttctactatatgtgctgcaccccaactctatctctaat-ttttcatttctaatcttatctcat 425  Q
    |||||||||||| ||||| ||||  |||||| |||||||| ||||||||||||||| ||||||||    
T  14749329 ttttctactataggtgctacacc--aactctctctctaatgttttcatttctaatcctatctcat 14749267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 462
Target Start/End: Complemental strand, 21952331 - 21952274
Alignment:
Q  405 tcatttctaatcttatctcatctcttcttaccacacatccaacacaacttcttcatct 462  Q
    ||||||||||||||||||| |||  ||||||||||||| |||| |||| || ||||||    
T  21952331 tcatttctaatcttatctcgtctagtcttaccacacatgcaacgcaacatcctcatct 21952274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 373
Target Start/End: Complemental strand, 28676663 - 28676606
Alignment:
Q  316 tcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactata 373  Q
    |||||||||||||  || |||||||||||  ||||||| ||| |||||||||||||||    
T  28676663 tcttctctctacatgccgaaaccacctaagactattttccaccatcttttctactata 28676606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 451
Target Start/End: Complemental strand, 14100321 - 14100253
Alignment:
Q  384 cccaactctatctctaatttt-tcatttctaatcttatctcatctcttcttaccacacatccaacacaa 451  Q
    ||||||||| ||| |||| || |||||||||||| ||| ||||||  |||||| |||||||||||||||    
T  14100321 cccaactctttctttaatgttgtcatttctaatcatatatcatcttctcttacgacacatccaacacaa 14100253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 292 - 463
Target Start/End: Complemental strand, 33710016 - 33709841
Alignment:
Q  292 tctcattactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactc 391  Q
    |||| |||||| | |||| ||| |||||||||| |||  || |||||||||||||||| ||| ||| ||||||||||||||| ||| |  ||||||||||    
T  33710016 tctctttactacagaatccacagttcttctctccacatgcctaaaccacctaaacctagtttccaccatcttttctactataggtgtt--accccaactc 33709919  T
Q  392 tatctctaat-ttttcatttctaatcttatc---tcatctct--tcttaccacacatccaacacaacttcttcatctc 463  Q
    | |||||||| ||  ||||||||||| ||||   |||| |||  |||||||||||||||||| |||| || |||||||    
T  33709918 tctctctaatgttgccatttctaatcctatcctatcatgtctagtcttaccacacatccaacgcaacatcatcatctc 33709841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 292 - 463
Target Start/End: Complemental strand, 54470299 - 54470129
Alignment:
Q  292 tctcattactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactc 391  Q
    |||| |||||| | ||| ||||| |||||||||||||  || ||||||| |||  ||| ||| ||| ||||||||||||||| |||||  ||||||||||    
T  54470299 tctccttactacataatttacatgtcttctctctacatgcccaaaccacttaagtctagtttccaccatcttttctactataggtgct--accccaactc 54470202  T
Q  392 tatctctaat-ttttcatttctaatcttatctcatctcttcttaccacacatccaacacaacttcttcatctc 463  Q
    | |||||||| || | ||||| |||| |||| |||||  |||||||||||||||||  |||| || |||||||    
T  54470201 tctctctaatgttgttatttcaaatcatatcccatctagtcttaccacacatccaatgcaacatcctcatctc 54470129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 304 - 401
Target Start/End: Original strand, 30621406 - 30621501
Alignment:
Q  304 aaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaat 401  Q
    ||||||||||  ||||||||||||   || ||| |||||||||||||||| ||| ||||||||||||||| |||||  ||||||||||  ||||||||    
T  30621406 aaaatctacaaatcttctctctacgtgcccaaatcacctaaacctattttccaccatcttttctactataagtgct--accccaactccctctctaat 30621501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 452
Target Start/End: Complemental strand, 50662480 - 50662322
Alignment:
Q  292 tctcattactataaaatctacatttcttctctctacacacc-aaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaact 390  Q
    |||| |||| ||| ||||||||  |||||||||||||  || |||||||||||| |||| ||| ||| ||||||||||||||| ||| ||  ||| ||||    
T  50662480 tctccttacaatagaatctacaagtcttctctctacatgcccaaaaccacctaagcctactttccaccatcttttctactataggtgttg--cccaaact 50662383  T
Q  391 ctatctctaat-ttttcatttctaatcttatctcatctcttcttaccacacatccaacacaac 452  Q
    |  ||||||||  | ||||||| |||| |||||||| |  ||||||||||||||| |||||||    
T  50662382 c--tctctaatgctgtcatttccaatcctatctcatatagtcttaccacacatcctacacaac 50662322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 451
Target Start/End: Original strand, 51252665 - 51252807
Alignment:
Q  306 aatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaat-ttt 404  Q
    |||| |||| |||||||||||||  || | ||||||||| |||| ||| ||| ||||||||||||| | |||||  ||||||||||  |||||||| |      
T  51252665 aatccacatgtcttctctctacatgcccataccacctaagcctagtttccaccatcttttctactagaggtgct--accccaactc--tctctaatgtag 51252760  T
Q  405 tcatttctaatcttatctcatctcttcttaccacacatccaacacaa 451  Q
    |||||||||||| |||||| |||  |||||| ||||||| |||||||    
T  51252761 tcatttctaatcctatctcgtctagtcttacgacacatctaacacaa 51252807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 452
Target Start/End: Complemental strand, 17900504 - 17900413
Alignment:
Q  360 tcttttctactatatgtgctgcaccccaactctatctctaatttt-tcatttctaatcttatctcatctcttcttaccacacatccaacacaac 452  Q
    |||||||||||||| |||||  ||||||||||  |||||||| |  ||||||||||| ||||| |||||  |||||||||||||||||| ||||    
T  17900504 tcttttctactataggtgct--accccaactccgtctctaatgtcgtcatttctaattttatcccatctagtcttaccacacatccaacgcaac 17900413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 334 - 379
Target Start/End: Original strand, 55768733 - 55768778
Alignment:
Q  334 aaaccacctaaacctatttttcacgatcttttctactatatgtgct 379  Q
    |||||||||||||||||||| || |||||||||||||||| |||||    
T  55768733 aaaccacctaaacctattttccatgatcttttctactataggtgct 55768778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 334 - 379
Target Start/End: Original strand, 55832989 - 55833034
Alignment:
Q  334 aaaccacctaaacctatttttcacgatcttttctactatatgtgct 379  Q
    |||||||||||||||||||| || |||||||||||||||| |||||    
T  55832989 aaaccacctaaacctattttccatgatcttttctactataggtgct 55833034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 398
Target Start/End: Complemental strand, 28497581 - 28497478
Alignment:
Q  292 tctcattactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactc 391  Q
    |||| |||||| | ||||||||  |||||||||||||  || ||||||||||| ||| |||| ||| ||||||||||||| | |||||  ||||||||||    
T  28497581 tctccttactacataatctacaagtcttctctctacatgcccaaaccacctaagcct-ttttccacaatcttttctactaaaggtgct--accccaactc 28497485  T
Q  392 tatctct 398  Q
    | |||||    
T  28497484 tctctct 28497478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 463
Target Start/End: Original strand, 34233318 - 34233393
Alignment:
Q  389 ctctatctctaatttt-tcatttctaatcttatctcatctcttcttaccacacatccaacacaacttcttcatctc 463  Q
    ||||||||||||| || || ||||||||| |||| |||||  ||||| ||||||||||||||||| || |||||||    
T  34233318 ctctatctctaatgttgtcgtttctaatcctatcacatctagtcttatcacacatccaacacaacatcatcatctc 34233393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 460
Target Start/End: Original strand, 27991730 - 27991772
Alignment:
Q  418 tatctcatctcttcttaccacacatccaacacaacttcttcat 460  Q
    ||||||||||  ||||||||||||||||||||||| |||||||    
T  27991730 tatctcatctaatcttaccacacatccaacacaacatcttcat 27991772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 452
Target Start/End: Complemental strand, 44860833 - 44860787
Alignment:
Q  406 catttctaatcttatctcatctcttcttaccacacatccaacacaac 452  Q
    |||||||||||||||  |||||  |||||||||||||||||||||||    
T  44860833 catttctaatcttattccatctagtcttaccacacatccaacacaac 44860787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 379
Target Start/End: Original strand, 7092416 - 7092497
Alignment:
Q  298 tactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgct 379  Q
    |||||||| |||||||| ||||||||||| |  || ||||||| ||||||||||||  |  || |||||||||||| |||||    
T  7092416 tactataacatctacatgtcttctctctatatgcccaaaccacttaaacctattttctatcatattttctactataggtgct 7092497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 463
Target Start/End: Original strand, 31960028 - 31960174
Alignment:
Q  316 tcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaat-ttttcatttctaa 414  Q
    |||||||||||||  || |||||| |||| ||||||||  || | ||||||||||||| |||||  ||||| ||||| ||||||||  | ||||| ||||    
T  31960028 tcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgct--acccccactctctctctaatggtgtcattcctaa 31960125  T
Q  415 tcttatctcatctcttcttaccacacatccaacacaacttcttcatctc 463  Q
    || ||||   |||  ||||||||| |||||||| |||| || |||||||    
T  31960126 tcctatcctgtctagtcttaccactcatccaacgcaacatcctcatctc 31960174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 463
Target Start/End: Complemental strand, 56375358 - 56375212
Alignment:
Q  316 tcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaatttt-tcatttctaa 414  Q
    |||||||||||||  || |||||| |||| ||| ||||  || | |||||||| |||| |||||  ||||| ||||| ||||||||  | ||||| ||||    
T  56375358 tcttctctctacatgcccaaaccatctaagcctgttttctaccaacttttctattataggtgct--acccctactctctctctaatggtgtcattcctaa 56375261  T
Q  415 tcttatctcatctcttcttaccacacatccaacacaacttcttcatctc 463  Q
    ||||||||  |||  ||||||||| |||||||| |||| || |||||||    
T  56375260 tcttatcttgtctagtcttaccactcatccaacgcaacatcctcatctc 56375212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 379
Target Start/End: Complemental strand, 28236260 - 28236188
Alignment:
Q  307 atctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgct 379  Q
    |||||||  |||||||||||||  || |||||| |||| |||||||| ||| | ||||||||||||| |||||    
T  28236260 atctacaagtcttctctctacatgcccaaaccatctaagcctattttccaccaacttttctactataggtgct 28236188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 372
Target Start/End: Complemental strand, 50471594 - 50471538
Alignment:
Q  316 tcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactat 372  Q
    |||||||||||||  || ||||||| |||||||| ||| ||| ||||||||||||||    
T  50471594 tcttctctctacatgcccaaaccacttaaacctagtttccaccatcttttctactat 50471538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 316 - 463
Target Start/End: Complemental strand, 9509386 - 9509240
Alignment:
Q  316 tcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaat-ttttcatttctaa 414  Q
    |||||||||||||  || |||| |||||| ||||||||| || ||||||||||||||| |||||  ||||||||||| ||||||||  | ||||||||||    
T  9509386 tcttctctctacatgcccaaactacctaagcctattttttaccatcttttctactataggtgct--accccaactctctctctaatggtgtcatttctaa 9509289  T
Q  415 tcttatctcatctcttcttaccacacatccaacacaacttcttcatctc 463  Q
    || ||||   |||  ||||| ||| ||||||||||||| || |||||||    
T  9509288 tcatatcctgtctagtcttatcactcatccaacacaacatcctcatctc 9509240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 282 - 373
Target Start/End: Original strand, 48431586 - 48431677
Alignment:
Q  282 tctgatcatttctcattactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactata 373  Q
    ||||||||  |||| |||||| ||||||||||  |||||||||||||  || ||||||||||| |||||||| ||| |||||||||||||||    
T  48431586 tctgatcaactctctttactacaaaatctacaagtcttctctctacatgcccaaaccacctaagcctattttccaccatcttttctactata 48431677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 421
Target Start/End: Original strand, 35828764 - 35828868
Alignment:
Q  316 tcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaat-ttttcatttctaa 414  Q
    ||||||||||||||  | ||||||||||| |||||||| ||| ||||||||||| ||| |||||  || | |||||| |||||||| || ||||||||||    
T  35828764 tcttctctctacacgtccaaaccacctaaccctattttccaccatcttttctaccataggtgct--actcaaactctctctctaatattgtcatttctaa 35828861  T
Q  415 tcttatc 421  Q
    |||||||    
T  35828862 tcttatc 35828868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 379
Target Start/End: Complemental strand, 40416463 - 40416376
Alignment:
Q  292 tctcattactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgct 379  Q
    |||| |||||| |||||||||| ||||||||||||||  || ||||||||||| |||  ||| ||| ||||||||||||||| |||||    
T  40416463 tctccttactacaaaatctacagttcttctctctacatgcctaaaccacctaagcctcgtttccaccatcttttctactataggtgct 40416376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 373
Target Start/End: Original strand, 32404716 - 32404797
Alignment:
Q  292 tctcattactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactata 373  Q
    |||| |||||||| ||||||||  ||||||||||||| | | ||||||||||| |||||||| ||| ||||||| |||||||    
T  32404716 tctccttactatagaatctacaggtcttctctctacatatccaaaccacctaagcctattttccaccatcttttttactata 32404797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 437
Target Start/End: Complemental strand, 39140588 - 39140468
Alignment:
Q  316 tcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaat-ttttcatttctaa 414  Q
    |||||||||||||  || ||||||||||| || ||||||  | ||||||||||||||| |||||  || |||||||| ||| ||||  ||||||| ||||    
T  39140588 tcttctctctacatgcccaaaccacctaagccaattttttgccatcttttctactataggtgct--acgccaactctctctgtaatggtttcattcctaa 39140491  T
Q  415 tcttatctcatctcttcttacca 437  Q
    || ||||||||||  ||||||||    
T  39140490 tcctatctcatctagtcttacca 39140468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 382 - 452
Target Start/End: Original strand, 52442782 - 52442853
Alignment:
Q  382 accccaactctatctctaatttt-tcatttctaatcttatctcatctcttcttaccacacatccaacacaac 452  Q
    ||||||||||| |||| ||| || ||||||||||||||||||  |||  |||||||||||||||||||||||    
T  52442782 accccaactctctctccaatgttctcatttctaatcttatcttgtctagtcttaccacacatccaacacaac 52442853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 463
Target Start/End: Original strand, 9599627 - 9599754
Alignment:
Q  335 aaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaat-ttttcatttctaatcttatctcatctcttctt 433  Q
    |||||||||| ||||||||  || ||||||||||||||| ||| |  || |||||||| ||||||||  | ||||| |||||| |||| | |||  ||||    
T  9599627 aaccacctaagcctattttctaccatcttttctactataggtgtt--actccaactctctctctaatgatgtcattcctaatcatatcccgtctagtctt 9599724  T
Q  434 accacacatccaacacaacttcttcatctc 463  Q
    ||||| ||||||||||||| || |||||||    
T  9599725 accactcatccaacacaacatcctcatctc 9599754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 421
Target Start/End: Complemental strand, 43423806 - 43423683
Alignment:
Q  297 ttactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatct 396  Q
    |||||| | ||||||||  |||||||||||||   | ||||||||||| |||| ||| ||| ||||||||||||||| ||| |  ||||||||||| |||    
T  43423806 ttactacataatctacaagtcttctctctacatggccaaaccacctaagcctagtttccaccatcttttctactataggtgtt--accccaactctctct 43423709  T
Q  397 ctaat-ttttcatttctaatcttatc 421  Q
    ||||| |  |||||||||||| ||||    
T  43423708 ctaatgtggtcatttctaatcctatc 43423683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 465
Target Start/End: Complemental strand, 4380002 - 4379925
Alignment:
Q  389 ctctatctctaatttt-tcatttctaatcttatctcatctcttcttaccacacatccaacacaacttcttcatctcag 465  Q
    |||| |||||||| || |||||||||||| |||||  |||  ||||||||||||||||||||||| || |||||||||    
T  4380002 ctctctctctaatgttgtcatttctaatcatatcttttctagtcttaccacacatccaacacaacatcctcatctcag 4379925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 403 - 452
Target Start/End: Original strand, 29578231 - 29578280
Alignment:
Q  403 tttcatttctaatcttatctcatctcttcttaccacacatccaacacaac 452  Q
    ||||||||||||||||||| | ||| || |||||||||||||||||||||    
T  29578231 tttcatttctaatcttatcgcttctattattaccacacatccaacacaac 29578280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 466
Target Start/End: Original strand, 34827404 - 34827465
Alignment:
Q  405 tcatttctaatcttatctcatctcttcttaccacacatccaacacaacttcttcatctcagt 466  Q
    |||||||||||||||| || |||  ||||||||| ||||||||||||| || ||||||||||    
T  34827404 tcatttctaatcttatatcgtctagtcttaccactcatccaacacaacatcctcatctcagt 34827465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 463
Target Start/End: Complemental strand, 8391815 - 8391694
Alignment:
Q  341 ctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaatttt-tcatttctaatcttatctcatctcttcttaccaca 439  Q
    |||||||||||||  || | ||||||||||||| |||||  ||||| ||||| ||||||||  | ||||| |||||| |||||  | |  |||||||||     
T  8391815 ctaaacctattttctaccaacttttctactataggtgct--acccccactctctctctaatggtgtcattcctaatcctatcttgtgtagtcttaccact 8391718  T
Q  440 catccaacacaacttcttcatctc 463  Q
    ||||||||||||| ||||||||||    
T  8391717 catccaacacaacatcttcatctc 8391694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 398
Target Start/End: Complemental strand, 2544691 - 2544587
Alignment:
Q  292 tctcattactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactc 391  Q
    |||| |||||||| |||||| |  |||||||||||||   | |||||||||||  || |||| ||| ||||||||||||||| |||||  ||||||||||    
T  2544691 tctccttactatagaatctataggtcttctctctacatgtccaaaccacctaagtctgttttccaccatcttttctactataggtgct--accccaactc 2544594  T
Q  392 tatctct 398  Q
    | |||||    
T  2544593 tctctct 2544587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 452
Target Start/End: Original strand, 16273122 - 16273169
Alignment:
Q  405 tcatttctaatcttatctcatctcttcttaccacacatccaacacaac 452  Q
    ||||||||||||| |||||||||  |||||||||||||||||| ||||    
T  16273122 tcatttctaatctcatctcatctagtcttaccacacatccaacgcaac 16273169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 451
Target Start/End: Complemental strand, 16943252 - 16943109
Alignment:
Q  306 aatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaatttt- 404  Q
    |||||| || ||||||| |||||| || ||||||| |||| ||| ||| ||| ||||||||||||||| || ||  ||||||||||| || ||||| ||     
T  16943252 aatctaaatgtcttctccctacacgcccaaaccac-taaatctagtttccaccatcttttctactataggtact--accccaactctctccctaatattg 16943156  T
Q  405 tcatttctaatcttatctcatctcttcttaccacacatccaacacaa 451  Q
    | || |||||| ||||||| |||  ||||| ||| ||||||||||||    
T  16943155 taatgtctaattttatctcgtctagtcttatcacgcatccaacacaa 16943109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 384
Target Start/End: Original strand, 36339998 - 36340085
Alignment:
Q  297 ttactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcacc 384  Q
    |||||| |||||||| |  |||||||||| ||   | |||||||||||||||||||| ||| |||||||||| |||| ||||| ||||    
T  36339998 ttactacaaaatctataggtcttctctctccatgtctaaaccacctaaacctattttccaccatcttttctaatataggtgctacacc 36340085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 421
Target Start/End: Complemental strand, 51812612 - 51812489
Alignment:
Q  297 ttactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatct 396  Q
    |||||| |||||||||| || |||||||||||  || ||| ||| ||| |||| ||| ||| |||||||||||||||  || |  ||||||||||| |||    
T  51812612 ttactacaaaatctacaatttttctctctacatgcccaaatcacataagcctagtttccaccatcttttctactatagttgtt--accccaactctctct 51812515  T
Q  397 ct-aatttttcatttctaatcttatc 421  Q
    || || |  |||||||||||||||||    
T  51812514 ctaaagtagtcatttctaatcttatc 51812489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 463
Target Start/End: Complemental strand, 1210813 - 1210667
Alignment:
Q  316 tcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaat-ttttcatttctaa 414  Q
    |||||||||||||  || |||||| |||| ||||||||  || | ||||||||||||| |||||  ||||| ||||| ||||||||  | ||||| ||||    
T  1210813 tcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgct--acccccactctctctctaatggtgtcattcctaa 1210716  T
Q  415 tcttatctcatctcttcttaccacacatccaacacaacttcttcatctc 463  Q
    || ||||   |||  ||||||||| |||||||| |||| || |||||||    
T  1210715 tcctatcctgtctagtcttaccactcatccaacgcaacatcctcatctc 1210667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 379
Target Start/End: Complemental strand, 41611883 - 41611811
Alignment:
Q  307 atctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgct 379  Q
    |||||||| |||||||||||||  |  ||||||| ||||||||||||  || |||||||||| |||| |||||    
T  41611883 atctacatatcttctctctacattctcaaaccacataaacctattttctaccatcttttctaatataagtgct 41611811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 373
Target Start/End: Complemental strand, 2079432 - 2079351
Alignment:
Q  292 tctcattactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactata 373  Q
    |||| |||||| | ||||||||  ||||||||||||| ||| ||||||| ||| |||||||| ||| |||||||||||||||    
T  2079432 tctccttactacataatctacaaatcttctctctacatacctaaaccacttaagcctattttccaccatcttttctactata 2079351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 447
Target Start/End: Complemental strand, 33084126 - 33083996
Alignment:
Q  316 tcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaatttt-tcatttctaa 414  Q
    |||||||||||||  || |||||||||||  ||| |||  || ||||||||||| ||| |||||  ||||||||||| |||||||| |  ||||||||||    
T  33084126 tcttctctctacattcccaaaccacctaagtctagtttctaccatcttttctaccataggtgct--accccaactctctctctaatatcgtcatttctaa 33084029  T
Q  415 tcttatctcatctcttcttaccacacatccaac 447  Q
    |  |||| |||||  ||||||||||||||||||    
T  33084028 ttctatcccatctagtcttaccacacatccaac 33083996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 385 - 463
Target Start/End: Original strand, 33998285 - 33998364
Alignment:
Q  385 ccaactctatctctaatttt-tcatttctaatcttatctcatctcttcttaccacacatccaacacaacttcttcatctc 463  Q
    |||||||| |||||||| |  |||||||||||| |||| |||||  |||||||||||||||||| |||| ||||||||||    
T  33998285 ccaactctctctctaatgtagtcatttctaatcctatcacatctagtcttaccacacatccaacgcaacatcttcatctc 33998364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 463
Target Start/End: Original strand, 7513285 - 7513343
Alignment:
Q  405 tcatttctaatcttatctcatctcttcttaccacacatccaacacaacttcttcatctc 463  Q
    ||||||| |||||||||||||||  |||||||||||||||||| |||| ||||| ||||    
T  7513285 tcatttcaaatcttatctcatctagtcttaccacacatccaacgcaacatcttcgtctc 7513343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 371
Target Start/End: Original strand, 9593911 - 9593975
Alignment:
Q  307 atctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctacta 371  Q
    |||||||| |||||||||||||  || ||||||||||| ||||||||  || |||||||||||||    
T  9593911 atctacatgtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctacta 9593975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 369
Target Start/End: Original strand, 9749419 - 9749491
Alignment:
Q  297 ttactataaaatctacatttcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctac 369  Q
    ||||||||||||||||||  ||||||||||||  || |||||||||||||| | ||| |||  ||||||||||    
T  9749419 ttactataaaatctacatgacttctctctacatccctaaaccacctaaaccaagtttccaccttcttttctac 9749491  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 452
Target Start/End: Original strand, 6641666 - 6641758
Alignment:
Q  359 atcttttctactatatgtgctgcaccccaactctatctctaat-ttttcatttctaatcttatctcatctcttcttaccacacatccaacacaac 452  Q
    ||||||||||||||| ||| |  |||||||||||||||||||| || ||||||| ||||||||| |||||  |||||| | ||||| ||| ||||    
T  6641666 atcttttctactataggtgat--accccaactctatctctaatattgtcatttccaatcttatcccatctagtcttacaaaacatcgaacgcaac 6641758  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 15521925 - 15521970
Alignment:
Q  88 aattctaaagtgaacagataaataaacgcacaagaatacaatgatt 133  Q
    |||||||||||  | ||||||||||||||||||||| |||||||||    
T  15521925 aattctaaagttgatagataaataaacgcacaagaacacaatgatt 15521970  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 452
Target Start/End: Original strand, 12134145 - 12134250
Alignment:
Q  346 cctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaatttt-tcatttctaatcttatctcatctcttcttaccacacatcc 444  Q
    |||||||| ||| ||||||||||||||| ||  |  ||| ||| ||| |||||||| || |||||||||||  ||| ||||||  |||| ||||||||||    
T  12134145 cctattttccaccatcttttctactataggtcgt--acctcaattctctctctaatattgtcatttctaattctatatcatcttgtcttgccacacatcc 12134242  T
Q  445 aacacaac 452  Q
    ||||||||    
T  12134243 aacacaac 12134250  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 392
Target Start/End: Original strand, 44082 - 44156
Alignment:
Q  316 tcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactct 392  Q
    |||||||||||||  || ||||||||||| |||||||| | | ||||||||||||||| |||||  |||||||||||    
T  44082 tcttctctctacatgcccaaaccacctaagcctattttccgccatcttttctactataggtgct--accccaactct 44156  T

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Target: scaffold0018; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 452
Target Start/End: Complemental strand, 31536 - 31401
Alignment:
Q  316 tcttctctctacacaccaaaaccacctaaacctatttttcacgatcttttctactatatgtgctgcaccccaactctatctctaat-ttttcatttctaa 414  Q
    |||||||||||||  || |||||| |||| ||||||||  || | ||||||||||||| |||||  ||||| ||||| ||||||||  | ||||| ||||    
T  31536 tcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgct--acccccactctctctctaatggtgtcattcctaa 31439  T
Q  415 tcttatctcatctcttcttaccacacatccaacacaac 452  Q
    |||||||   |||  ||||||||| |||||||| ||||    
T  31438 tcttatcctgtctagtcttaccactcatccaacgcaac 31401  T

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