View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2942_high_4 (Length: 223)
Name: NF2942_high_4
Description: NF2942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2942_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 1346956 - 1346752
Alignment:
| Q |
1 |
actttcatttttgcaaaattcaatcagctcaaattcttgttttaagccttgcaacctttttcgttaaattggatctgcttcatatgttttgagcatattt |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1346956 |
actttcatctttgcaaaattcaatcagctcaaattcttgttttaagccttgtaacctttttcgttaaattggatctgcttcatatgttttgagcatattt |
1346857 |
T |
|
| Q |
101 |
cccaaacttgctttgttgttatagcatggaaactcttttcaaaatctagtagctcctcgtattgacttattaaaaacaaagctttttagtttgggagtgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1346856 |
cccaaacttgctttgttgttatagcatggaaactcttttcaaaatctagtagctcctcatattgacttattaaaaacaaagctttttagtttgggagtgg |
1346757 |
T |
|
| Q |
201 |
attag |
205 |
Q |
| |
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||||| |
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| T |
1346756 |
attag |
1346752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 19653021 - 19652915
Alignment:
| Q |
80 |
tcatatgttttgagcata-tttcccaaacttgctttgttgttatagcatggaaactcttttcaaaatctagtagctcctcgtattgacttattaaaaaca |
178 |
Q |
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|||||||||||| ||||| ||| |||| || |||||||||||||||||||| | || |||| |||| ||| || ||| |||||||||||| |||||| |
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| T |
19653021 |
tcatatgttttgtgcataattttccaagtttcatttgttgttatagcatggaattttttctcaagatctggtatctgctcatattgacttatttaaaaca |
19652922 |
T |
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| Q |
179 |
aagcttt |
185 |
Q |
| |
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||||||| |
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| T |
19652921 |
aagcttt |
19652915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 40036832 - 40036960
Alignment:
| Q |
2 |
ctttcatttttgcaaaattcaatcagctcaaattcttgttttaagccttgcaacctttttcgttaaattggatctgcttcatatgttttgagcat-attt |
100 |
Q |
| |
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||||||| |||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| ||| |||||||||||| |||| |
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| T |
40036832 |
ctttcatctttgtaaaattcaatcagctcaaattgttgttttaagtcttgcaacctttttcgttaaattggatttgctccatgtgttttgagcataattt |
40036931 |
T |
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| Q |
101 |
cccaaacttgctttgttgttatagcatgg |
129 |
Q |
| |
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||||| |||| ||| |||||||||||||| |
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| T |
40036932 |
cccaagcttgttttattgttatagcatgg |
40036960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 10 - 134
Target Start/End: Original strand, 40031496 - 40031623
Alignment:
| Q |
10 |
tttgcaaaattcaatcagctcaaattcttgttttaagccttgcaacctttttcgttaaattggatctgcttcatatgttttgagcat-atttcccaaact |
108 |
Q |
| |
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|||| |||||||||| |||||||||| |||||||||| ||||||||||||||| ||||| ||||| |||| ||| |||||||||||| ||||||||| || |
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| T |
40031496 |
tttgtaaaattcaataagctcaaattgttgttttaagtcttgcaacctttttctttaaactggatttgctccatgtgttttgagcataatttcccaagct |
40031595 |
T |
|
| Q |
109 |
tgctttgttgt--tatagcatggaaact |
134 |
Q |
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||||||| | | ||||||||||||||| |
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| T |
40031596 |
tgctttgctattatatagcatggaaact |
40031623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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