View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2942_low_1 (Length: 575)
Name: NF2942_low_1
Description: NF2942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2942_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 12387217 - 12386875
Alignment:
| Q |
18 |
atgcttggccatggtttcaaacttggtattaaattctgcaacaatttggtcttcttaggataatctcaacatctaggcctatttcccatacctagcaata |
117 |
Q |
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| T |
12387217 |
atgcttggccatggtttcaaacttggtattaaattctgcaacaatttggtcttcttaggataatctcaacatctaggcctatttcccatacctagcaata |
12387118 |
T |
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| Q |
118 |
agtggaaagtatttcttgtggaatttccccttgaaaacctcccatgtcagctcttcatgggtaggtctcttccagtactctacctcttcgatcgtccgat |
217 |
Q |
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| T |
12387117 |
agtggaaagtatttcttgtggaatttccccttgaaatcctcccatgtcagctcttcatgggtaggtctcttccagtactctacctcttcgatcgtccgat |
12387018 |
T |
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| Q |
218 |
agactggatattctctttactatcacaaaaggctaagaagtaatgaaaagtttatgattatcaggttttattatattactccatttctaagagtgaaggg |
317 |
Q |
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| T |
12387017 |
agactgcatattctctttaatatcacaaaaggctaagaagtaatgaaaagtttatgattatcaggttttattatattactccatttctaagagtgaaggg |
12386918 |
T |
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| Q |
318 |
ataaagacatcatactgatatacttaagaggcatttagtagtg |
360 |
Q |
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| T |
12386917 |
ataaagacatcatactgatatacttaagaggcatttagtagtg |
12386875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 424 - 566
Target Start/End: Complemental strand, 12386811 - 12386669
Alignment:
| Q |
424 |
gagagcatgaaatttatacactataaatatatcttacctatattttttatgcaaagaggaaaaatatggcagaaactatgaaatttgtttatgttatgac |
523 |
Q |
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| T |
12386811 |
gagagcatgaaatttatacactataaatatatcttacctatattttttatgcaaagaggaaaaatatggcagaaactatgaaatttgtttatgttatgac |
12386712 |
T |
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| Q |
524 |
tctacttttttccataattcttgtttaaatagtttatgatgat |
566 |
Q |
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| T |
12386711 |
tctacttttttccataattcttgtttaaatagtctatgatgat |
12386669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 544
Target Start/End: Complemental strand, 1872447 - 1872374
Alignment:
| Q |
472 |
atgcaaagag-gaaaaatatggcagaaactatgaaatttgtttatgttatgactctacttttttccataattct |
544 |
Q |
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| T |
1872447 |
atgcaaagagtgaaaaatatggctgaaactctgaagtttgtttatgttctgattctatttatttccatatttct |
1872374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 547
Target Start/End: Complemental strand, 1811879 - 1811749
Alignment:
| Q |
424 |
gagagcatgaaatttatacactataaatatatc---ttac---ctatattttttatgcaaagag-gaaaaatatggcagaaactatgaaatttgtttatg |
516 |
Q |
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| T |
1811879 |
gagagcataaactttatacactataaatatatcaaattatattctatttttcatatgcaaagagcgaaaaaaatggttgaaactctgaagtttatttatg |
1811780 |
T |
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| Q |
517 |
ttatgactctacttttttccataattcttgt |
547 |
Q |
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| T |
1811779 |
ttatgattctatttgtttccatatttcttgt |
1811749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 547
Target Start/End: Complemental strand, 15465556 - 15465491
Alignment:
| Q |
482 |
gaaaaatatggcagaaactatgaaatttgtttatgttatgactctacttttttccataattcttgt |
547 |
Q |
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| T |
15465556 |
gaaaaatatggctgaaactctgaagtttgtttatgttctgattctgcttatttccatatttcttgt |
15465491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 546
Target Start/End: Complemental strand, 5719877 - 5719817
Alignment:
| Q |
486 |
aatatggcagaaactatgaaatttgtttatgttatgactctacttttttccataattcttg |
546 |
Q |
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|||||||| ||||||||||| || ||||||||||| | |||| || |||||||| |||||| |
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| T |
5719877 |
aatatggctgaaactatgaagttagtttatgttataattctatttctttccatatttcttg |
5719817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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