View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2942_low_3 (Length: 340)
Name: NF2942_low_3
Description: NF2942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2942_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 321
Target Start/End: Original strand, 54014331 - 54014637
Alignment:
| Q |
15 |
taaacacatggaggtatcatggttaatgaaccggaataaatatgcaactggtcttcctctatggctgtataaatagacagtttccaaaaacataatccat |
114 |
Q |
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| T |
54014331 |
taaacacatggaggtatcatggttcatgaaccggaataaatatgtaactggtcttcctttatggctttataaatagacagtttccaaaaacataatccat |
54014430 |
T |
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| Q |
115 |
gtgataaggcttaaaaagttaaattgaagatctgagaatctcaccggttaaaggcgttggtaccggagatgaatgatgaagagagtgatagtttttgaaa |
214 |
Q |
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| T |
54014431 |
gtgataaggcttaaaaagttaaattgaagatctgagaatctcaccggttaaaggcgttggtaccggagatgaatgatgaagagagtgatagtttttgaaa |
54014530 |
T |
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| Q |
215 |
agataatctccatgaaatttcttatgtacccaataataaagtggctctgaaactcccacatgtagaatcatggcaacaataataccttttatattccata |
314 |
Q |
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| T |
54014531 |
agataatctccatgaaatttcttatgtacccaataataaagtggctctgaaactcccacatgtagaatcatagcaacaataataccttttacattccata |
54014630 |
T |
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| Q |
315 |
gaggaag |
321 |
Q |
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| T |
54014631 |
gaggaag |
54014637 |
T |
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