View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2942_low_4 (Length: 330)
Name: NF2942_low_4
Description: NF2942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2942_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 1347248 - 1347583
Alignment:
| Q |
1 |
gcaaaactaaagagggaaaaagttcagaggtagaactaactcaagcaatggaacaagaggtaatggctctgtgcaaaataaagcagtgtcatgaatgcaa |
100 |
Q |
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| T |
1347248 |
gcaaaactaaagagggcaaaagttcagaggtagaactaactcaagcaatggaactagaggtaatggctctgtgcaaaataaagcagtgtcatgaatgcaa |
1347347 |
T |
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| Q |
101 |
gaaatatggaca------------cagccacaaattgttctattcaaccaacgtggttacgaaaaatgctaagcaatgcatatatcgcgtagttattaag |
188 |
Q |
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| T |
1347348 |
gaaatatggacataatatatatatcagcaacaaattgttctattcaagcaacgtggttacgaaaaatgctaagcaaagcatatatcgcgtagttattaag |
1347447 |
T |
|
| Q |
189 |
tgcaccctagaattgttggaccattgatttgtataaggagacaaaacctatacttttcaaaccatcaaatccaatagtagcaggtatagaaaattaagaa |
288 |
Q |
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| T |
1347448 |
tgtaccctagaattgttggaccattgatttgtataaggagacaaaacctatacttttcaaaccatcaaatccaatagtagcaggtatagaaaattaagaa |
1347547 |
T |
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| Q |
289 |
aaaaccaagtatacatctaggaaatattcatctcac |
324 |
Q |
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| T |
1347548 |
aacaccaagtatatatctaggaaatattcatatcac |
1347583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 142 - 258
Target Start/End: Complemental strand, 8675798 - 8675681
Alignment:
| Q |
142 |
tggttacgaaaaatgctaagcaatgcatatatcgcgtagttattaagtgcaccctagaattgttggacc-attgatttgtataaggagacaaaacctata |
240 |
Q |
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| T |
8675798 |
tggttacagaaaatgctaagcaaaacatatattgcatagttatcaagtgcaccctagaattggaagaccgtttgatttgtataaggagaccaagcctgta |
8675699 |
T |
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| Q |
241 |
cttttcaaaccatcaaat |
258 |
Q |
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| T |
8675698 |
ttgttcaaaccgtcaaat |
8675681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 224
Target Start/End: Complemental strand, 9619439 - 9619327
Alignment:
| Q |
112 |
acagccacaaattgttctattcaaccaacgtggttacgaaaaatgctaagcaatgcatatatcgcgtagttattaagtgcaccctagaattgttggacca |
211 |
Q |
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| T |
9619439 |
acagccacaaattattttactcaagcaatttggttacagaaaatgctaagcataacatacattgcacagttattaagtgcaccctataattagaagacca |
9619340 |
T |
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| Q |
212 |
ttgatttgtataa |
224 |
Q |
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| T |
9619339 |
tttatttgtataa |
9619327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 15785176 - 15785105
Alignment:
| Q |
178 |
tagttattaagtgcaccctagaattgttggaccattgatttgtataaggagacaaaacctatacttttcaaa |
249 |
Q |
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| T |
15785176 |
tagttatcaagtgcaccctagaattggtggaccattaattggtataaggagaccaaacctatattgttcaaa |
15785105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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