View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2942_low_5 (Length: 272)

Name: NF2942_low_5
Description: NF2942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2942_low_5
NF2942_low_5
[»] chr4 (25 HSPs)
chr4 (42-250)||(48852512-48852720)
chr4 (83-185)||(48891326-48891428)
chr4 (140-232)||(48898586-48898678)
chr4 (140-245)||(37827110-37827215)
chr4 (140-232)||(49044312-49044404)
chr4 (134-189)||(48170690-48170745)
chr4 (147-242)||(48863086-48863181)
chr4 (141-232)||(50250907-50250998)
chr4 (144-189)||(48870452-48870497)
chr4 (140-189)||(48875756-48875805)
chr4 (144-189)||(48886138-48886183)
chr4 (149-231)||(7822840-7822922)
chr4 (134-188)||(33133924-33133978)
chr4 (143-189)||(48705478-48705524)
chr4 (65-105)||(49048623-49048663)
chr4 (140-191)||(49048700-49048751)
chr4 (146-185)||(50672412-50672451)
chr4 (149-231)||(7800508-7800590)
chr4 (149-231)||(7813351-7813433)
chr4 (131-185)||(48156525-48156579)
chr4 (61-99)||(49041210-49041248)
chr4 (140-190)||(49041271-49041321)
chr4 (42-104)||(50669047-50669109)
chr4 (47-104)||(49044219-49044276)
chr4 (140-228)||(50668923-50669011)
[»] chr6 (3 HSPs)
chr6 (65-232)||(21015673-21015840)
chr6 (131-242)||(21979757-21979868)
chr6 (61-103)||(14197710-14197752)
[»] chr5 (4 HSPs)
chr5 (132-189)||(42562439-42562496)
chr5 (148-186)||(29261163-29261201)
chr5 (149-191)||(29688019-29688061)
chr5 (42-99)||(29696203-29696260)
[»] chr7 (2 HSPs)
chr7 (42-185)||(48883712-48883855)
chr7 (148-186)||(30120435-30120473)
[»] chr3 (3 HSPs)
chr3 (140-232)||(47452023-47452115)
chr3 (146-232)||(11015641-11015727)
chr3 (61-126)||(11024574-11024639)
[»] chr1 (1 HSPs)
chr1 (147-232)||(24310050-24310135)
[»] chr8 (3 HSPs)
chr8 (46-104)||(12200299-12200357)
chr8 (46-104)||(12444727-12444785)
chr8 (74-219)||(4031960-4032105)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 42 - 250
Target Start/End: Complemental strand, 48852720 - 48852512
Alignment:
Q  42 cataggacattaaaactaacaagtaatcatcggttgacgggtcatacccaaaaccatatagataacagaaatatgtgccatctaacctcgaatcaatggg 141  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48852720 cataggacattaaaactaccaagtaatcatcggttgacgggtcatacccaaaaccatatagataacagaaatatgtgccatctaacctcgaatcaatggg 48852621  T
Q  142 agacaaaggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatgaagcattaata 241  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  48852620 agacaaaggtatttgtttgtgaactccggtggatggattccatagataaatctctgaagaacggtgcaaaaatataaagcctctacatgaagcattaata 48852521  T
Q  242 tgaatgtaa 250  Q
    |||||||||    
T  48852520 tgaatgtaa 48852512  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 48891428 - 48891326
Alignment:
Q  83 tcatacccaaaaccatatagataacagaaatatgtgccatctaacctcgaatcaatgggagacaaaggtatttgtttgtgaactccggtagatggattcc 182  Q
    ||||||| |||||||||||||||||| |||||  || ||||||||||||||||||| ||||||||||||||||||||||||| ||| || ||||||||||    
T  48891428 tcatacctaaaaccatatagataacataaatagttggcatctaacctcgaatcaataggagacaaaggtatttgtttgtgaagtccagtggatggattcc 48891329  T
Q  183 ata 185  Q
    |||    
T  48891328 ata 48891326  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 48898678 - 48898586
Alignment:
Q  140 ggagacaaaggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatgaa 232  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||  || |||||  ||   || |||| |||||||||||||||||||    
T  48898678 ggagacaaaggtatttgtttgtgagctccggtggatggattccataggtggatatctgagcaagtatgcaaaagtataaagcctctacatgaa 48898586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 245
Target Start/End: Original strand, 37827110 - 37827215
Alignment:
Q  140 ggagacaaaggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatgaagcattaa 239  Q
    |||||||| |||||||||||||||| ||| || ||||||||||||| ||| || | | |||||||||| ||||||| ||| ||||||| |||| | ||||    
T  37827110 ggagacaagggtatttgtttgtgaaatccagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacctgaacctttaa 37827209  T
Q  240 tatgaa 245  Q
    | ||||    
T  37827210 tttgaa 37827215  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 49044312 - 49044404
Alignment:
Q  140 ggagacaaaggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatgaa 232  Q
    ||||||||||||||||||||||||||||  || |||||||||||||| ||| |   || || ||| || ||||||||||| ||||||||||||    
T  49044312 ggagacaaaggtatttgtttgtgaactctagtggatggattccatagataagttgttgcagcacgatgcaaaaatataaaccctctacatgaa 49044404  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 48170690 - 48170745
Alignment:
Q  134 tcaatgggagacaaaggtatttgtttgtgaactccggtagatggattccataggta 189  Q
    ||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||    
T  48170690 tcaataggagacaaaggtatttgtttatgaactcgggtggatggattccataggta 48170745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 48863181 - 48863086
Alignment:
Q  147 aaggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatgaagcattaatat 242  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||| || | ||||| || ||  ||||  |||||||||||| ||||||| |||||||    
T  48863181 aaggtatttgtttctgagctccggtggatggattccataggtagatgtttgaagcacagttgaaaacaataaagcctctagatgaagctttaatat 48863086  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 232
Target Start/End: Original strand, 50250907 - 50250998
Alignment:
Q  141 gagacaaaggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatgaa 232  Q
    ||||||||||||||||| ||||||  ||||| ||||||||||||||||| |    |||| ||| ||| ||||||||||| ||||||||||||    
T  50250907 gagacaaaggtatttgtatgtgaagcccggtggatggattccataggtagaggcttgaaaaacagtggaaaaatataaatcctctacatgaa 50250998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 48870497 - 48870452
Alignment:
Q  144 acaaaggtatttgtttgtgaactccggtagatggattccataggta 189  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||    
T  48870497 acaaaggtatttgtttgtgaaatccggtggatggattccataggta 48870452  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 48875805 - 48875756
Alignment:
Q  140 ggagacaaaggtatttgtttgtgaactccggtagatggattccataggta 189  Q
    ||||||| ||||||||||||||||| |||||| |||||||||||||||||    
T  48875805 ggagacataggtatttgtttgtgaaatccggtggatggattccataggta 48875756  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 48886183 - 48886138
Alignment:
Q  144 acaaaggtatttgtttgtgaactccggtagatggattccataggta 189  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||    
T  48886183 acaaaggtatttgtttgtgaaatccggtggatggattccataggta 48886138  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 7822922 - 7822840
Alignment:
Q  149 ggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatga 231  Q
    ||||||||||| | || ||| ||||||||||||||||||||||| |||| | ||||||  ||||||| ||| |||| ||||||    
T  7822922 ggtatttgtttcttaaatccagtagatggattccataggtaaatgtctggaaaacggtataaaaataaaaaccctccacatga 7822840  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 33133924 - 33133978
Alignment:
Q  134 tcaatgggagacaaaggtatttgtttgtgaactccggtagatggattccataggt 188  Q
    ||||| |||||||||||||||||||| ||||||| |||  |||||||||||||||    
T  33133924 tcaattggagacaaaggtatttgtttatgaactcgggtgaatggattccataggt 33133978  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 48705478 - 48705524
Alignment:
Q  143 gacaaaggtatttgtttgtgaactccggtagatggattccataggta 189  Q
    |||||||||||||||||||||| ||| |||||||||||||| |||||    
T  48705478 gacaaaggtatttgtttgtgaaatccagtagatggattccacaggta 48705524  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 49048623 - 49048663
Alignment:
Q  65 taatcatcggttgacgggtcatacccaaaaccatatagata 105  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  49048623 taatcatctgttgatgggtcatacccaaaaccatatagata 49048663  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 49048700 - 49048751
Alignment:
Q  140 ggagacaaaggtatttgtttgtgaactccggtagatggattccataggtaaa 191  Q
    |||||||||||||||||| |||||||||  || ||||||||||| |||||||    
T  49048700 ggagacaaaggtatttgtctgtgaactctagtggatggattccaaaggtaaa 49048751  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 50672451 - 50672412
Alignment:
Q  146 aaaggtatttgtttgtgaactccggtagatggattccata 185  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  50672451 aaaggtatttgtttgtgaactcctgtggatggattccata 50672412  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 7800590 - 7800508
Alignment:
Q  149 ggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatga 231  Q
    ||||||||||| | || ||| |||||||||||||| |||||||| |||| | ||||||  ||||||| ||| |||| ||||||    
T  7800590 ggtatttgtttcttaaatccagtagatggattccacaggtaaatgtctggaaaacggtataaaaataaaaaccctccacatga 7800508  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 7813433 - 7813351
Alignment:
Q  149 ggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatga 231  Q
    ||||||||||| | || ||| |||||||||||||| |||||||| |||| | ||||||  ||||||| ||| |||| ||||||    
T  7813433 ggtatttgtttcttaaatccagtagatggattccacaggtaaatgtctggaaaacggtataaaaataaaaaccctccacatga 7813351  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 48156525 - 48156579
Alignment:
Q  131 gaatcaatgggagacaaaggtatttgtttgtgaactccggtagatggattccata 185  Q
    |||||| | |||||||||||||||||||||| |||||  || |||||||||||||    
T  48156525 gaatcattaggagacaaaggtatttgtttgtaaactctagttgatggattccata 48156579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 49041210 - 49041248
Alignment:
Q  61 caagtaatcatcggttgacgggtcatacccaaaaccata 99  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  49041210 caagtaatcatctgttgacggatcatacccaaaaccata 49041248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 49041271 - 49041321
Alignment:
Q  140 ggagacaaaggtatttgtttgtgaactccggtagatggattccataggtaa 190  Q
    |||| |||||||||| |||||||| ||||||| ||||| ||||||||||||    
T  49041271 ggaggcaaaggtattagtttgtgagctccggtggatgggttccataggtaa 49041321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 50669109 - 50669047
Alignment:
Q  42 cataggacattaaaactaacaagtaatcatcggttgacgggtcatacccaaaaccatatagat 104  Q
    ||||||||| | |||| | ||||||||||||  ||||| ||||||| ||||||||||||||||    
T  50669109 cataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatatagat 50669047  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 49044219 - 49044276
Alignment:
Q  47 gacattaaaactaacaagtaatcatcggttgacgggtcatacccaaaaccatatagat 104  Q
    ||||| ||||| | ||| |||||||| |||||||| ||||||||||||| ||||||||    
T  49044219 gacatcaaaaccaccaaataatcatctgttgacggatcatacccaaaacaatatagat 49044276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 50669011 - 50668923
Alignment:
Q  140 ggagacaaaggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctaca 228  Q
    |||||||| ||||| ||||| |||| || ||| ||||||||||||| | | || |  |||||||  || ||||||||||||||||||||    
T  50669011 ggagacaatggtatctgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctaca 50668923  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 232
Target Start/End: Complemental strand, 21015840 - 21015673
Alignment:
Q  65 taatcatcggttgacgggtcatacccaaaaccatatagataacagaaatatgtgccatctaacctcgaatcaatgggagacaaaggtatttgtttgtgaa 164  Q
    |||||||| ||||| ||||||||||||||||||||||||||||| | |||  || || ||||    |||  | | |||||||||||||||||||||||||    
T  21015840 taatcatctgttgatgggtcatacccaaaaccatatagataacatatataattgacacctaaatatgaactattaggagacaaaggtatttgtttgtgaa 21015741  T
Q  165 ctccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatgaa 232  Q
    |||  || ||||||||||||||||| || | ||||  | |||| ||||||||||| ||||||||||||    
T  21015740 ctctagtggatggattccataggtagatgtttgaatcatggtgcaaaaatataaaccctctacatgaa 21015673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 242
Target Start/End: Original strand, 21979757 - 21979868
Alignment:
Q  131 gaatcaatgggagacaaaggtatttgtttgtgaactccggtagatggattccataggta-aatctctgaagaacggtgaaaaaatataaagcctctacat 229  Q
    |||||||  |||||||||||||||||||| |||| ||| ||||| || ||||||| ||| | ||| |||| ||| ||| ||||||||||| |||||||||    
T  21979757 gaatcaagaggagacaaaggtatttgtttttgaagtccagtagacgggttccatatgtagagtct-tgaaaaacagtggaaaaatataaatcctctacat 21979855  T
Q  230 gaagcattaatat 242  Q
    ||| | |||||||    
T  21979856 gaacctttaatat 21979868  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 14197710 - 14197752
Alignment:
Q  61 caagtaatcatcggttgacgggtcatacccaaaaccatataga 103  Q
    ||||||||||| ||||||| ||||||||||||| |||||||||    
T  14197710 caagtaatcattggttgacaggtcatacccaaagccatataga 14197752  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 42562439 - 42562496
Alignment:
Q  132 aatcaatgggagacaaaggtatttgtttgtgaactccggtagatggattccataggta 189  Q
    ||||||| ||||||||||||||||||||||||  |||| | |||||||||||||||||    
T  42562439 aatcaataggagacaaaggtatttgtttgtgatgtccgatggatggattccataggta 42562496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 29261201 - 29261163
Alignment:
Q  148 aggtatttgtttgtgaactccggtagatggattccatag 186  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  29261201 aggtatttgtttgtggactccggttgatggattccatag 29261163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 29688061 - 29688019
Alignment:
Q  149 ggtatttgtttgtgaactccggtagatggattccataggtaaa 191  Q
    ||||||||| ||||||||||||| |||||||||||||| ||||    
T  29688061 ggtatttgtctgtgaactccggtggatggattccatagataaa 29688019  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 29696260 - 29696203
Alignment:
Q  42 cataggacattaaaactaacaagtaatcatcggttgacgggtcatacccaaaaccata 99  Q
    ||||||||||| |||  | |||||||||||| ||||||  ||||||||||||||||||    
T  29696260 cataggacattgaaatcaccaagtaatcatctgttgactcgtcatacccaaaaccata 29696203  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 185
Target Start/End: Complemental strand, 48883855 - 48883712
Alignment:
Q  42 cataggacattaaaactaacaagtaatcatcggttgacgggtcatacccaaaaccatatagataacagaaat-atgtgccatctaacctcgaatcaatgg 140  Q
    ||||||||||| |||| | || |||||||||  ||||||||||||| |||||||||||||||| |  ||||| ||||  | ||| |  | |||| ||  |    
T  48883855 cataggacattgaaaccaccatgtaatcatctcttgacgggtcataaccaaaaccatatagatgatcgaaataatgt-acttctgaaatggaataaaaag 48883757  T
Q  141 gagacaaaggtatttgtttgtgaactccggtagatggattccata 185  Q
    |||||||||||||||||||||||| ||| ||  ||||||||||||    
T  48883756 gagacaaaggtatttgtttgtgaaatccagtgtatggattccata 48883712  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 30120435 - 30120473
Alignment:
Q  148 aggtatttgtttgtgaactccggtagatggattccatag 186  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  30120435 aggtatttgtttgtggactccggtggatggattccatag 30120473  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 47452023 - 47452115
Alignment:
Q  140 ggagacaaaggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatgaa 232  Q
    |||| |||||||||||||||||||||||| || ||||||||||||| ||| || | ||||||||     |||| |||||| ||||||||||||    
T  47452023 ggaggcaaaggtatttgtttgtgaactccagtggatggattccatatgtagatgtttgaagaacaacttaaaagtataaaccctctacatgaa 47452115  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 232
Target Start/End: Original strand, 11015641 - 11015727
Alignment:
Q  146 aaaggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatgaa 232  Q
    ||||||||||||||||||  ||| || ||||||||||||||||| || | ||||||||     |||| |||||| ||||||||||||    
T  11015641 aaaggtatttgtttgtgatgtccagttgatggattccataggtagatgtttgaagaacaagtcaaaactataaatcctctacatgaa 11015727  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 11024574 - 11024639
Alignment:
Q  61 caagtaatcatcggttgacgggtcatacccaaaaccatatagataacagaaatatgtgccatctaa 126  Q
    ||||||||||||  ||||  ||||||||||||||||||||||| ||||  ||||| || |||||||    
T  11024574 caagtaatcatctcttgaatggtcatacccaaaaccatatagacaacatgaatatttggcatctaa 11024639  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 24310135 - 24310050
Alignment:
Q  147 aaggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatgaa 232  Q
    ||||||||||| | ||||||||||| ||||||||||||| |||||| | |||| |||  |  || |||||||| ||||||||||||    
T  24310135 aaggtatttgtctatgaactccggtggatggattccatacgtaaatgtttgaaaaacactccaacaatataaaacctctacatgaa 24310050  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 12200357 - 12200299
Alignment:
Q  46 ggacattaaaactaacaagtaatcatcggttgacgggtcatacccaaaaccatatagat 104  Q
    ||||| |||||| | ||||||||||||  ||||| ||||||| ||||||||||||||||    
T  12200357 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagat 12200299  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 12444785 - 12444727
Alignment:
Q  46 ggacattaaaactaacaagtaatcatcggttgacgggtcatacccaaaaccatatagat 104  Q
    ||||| |||||| | ||||||||||||  ||||| ||||||| ||||||||||||||||    
T  12444785 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagat 12444727  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 219
Target Start/End: Original strand, 4031960 - 4032105
Alignment:
Q  74 gttgacgggtcatacccaaaaccatatagataacagaaatatgtgccatctaacctcgaatcaatgggagacaaaggtatttgtttgtgaactccggtag 173  Q
    |||||| ||||||||||||||||||||| ||||| |||| |     | ||||   | |||| ||| ||||| |||||||||||||||||||||||  | |    
T  4031960 gttgactggtcatacccaaaaccatataaataaccgaaacaaccatcgtctagattggaattaataggagataaaggtatttgtttgtgaactccaatgg 4032059  T
Q  174 atggattccataggtaaatctctgaagaacggtgaaaaaatataaa 219  Q
    ||| |||||||||    || |||||||||| ||| | |||||||||    
T  4032060 atgaattccatagaagtatgtctgaagaactgtgcataaatataaa 4032105  T

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