View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2942_low_6 (Length: 249)
Name: NF2942_low_6
Description: NF2942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2942_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 9924067 - 9924298
Alignment:
| Q |
1 |
caaaatttgctttgcttcttaaaaagggacataannnnnnnaacattgtcaattatataactatatgatacaattaattaagctacaaaagttattcaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9924067 |
caaaatttgctttgcttcttaaaaagggacataatttttttaacattgtcaattatataactatataatacaattaattaagctacaaaagttattcaac |
9924166 |
T |
|
| Q |
101 |
tcataaagaaactcaaaaaagctaatatgaattacattgttctcaacaatttttgttgctaattgctatagatgttagaaggggtgcaagtttttgtagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9924167 |
tcataaagaaactcaaaaaagctaatatgaattacattgttctcaacaagttttgttgctaattgctatagatgttagaaggggtgcaagtttttgtagc |
9924266 |
T |
|
| Q |
201 |
caaggcaactagaaagtctctatagtccccac |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
9924267 |
caaggcaactagaaagtctctatagtccccac |
9924298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University