View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2943_high_3 (Length: 514)
Name: NF2943_high_3
Description: NF2943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2943_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 54946621 - 54947049
Alignment:
| Q |
1 |
atttgaggaagaaagggattatacaaatggttgtgaatgcggggattctttttgtttgtgttgtgcttgtcatggcaatcgaggttcctagagcagctgc |
100 |
Q |
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| T |
54946621 |
atttgaggaagaaagggattatacaaatggttgtgaatggggggatcctttttgtttgtgttgtgcttctcatggcaatcgaggttcctagagcagctgc |
54946720 |
T |
|
| Q |
101 |
acaaatgggtcaaattccaggtacttttcttctatgtcattgttactttacttttcttagttcttcannnnnnnnngcattgttcttttttgttaacatt |
200 |
Q |
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| T |
54946721 |
acaaatgggtcaaattccaggtacttttcttctatgtcattgttactttacttttcttagttcttcatttttttttgcattgttcttttttgttaacatt |
54946820 |
T |
|
| Q |
201 |
agaacaaacatgtgtgtagatgattcattgacacttataaatcttaaccattagatgtaattaattcattaaccaacaatattccatctttttaaacatg |
300 |
Q |
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| T |
54946821 |
agaacaaacatgtgtgtagatgattcattgacac---taaatcttaaccattagatctaattaattcatcgaccaacaatattctatctttttaaacatg |
54946917 |
T |
|
| Q |
301 |
aaaacatatagaagagaagcacgacaccaatgaaattgcaaaacatta-----------tgcgtttgttagcaataaaaaaggacgattttgacatttta |
389 |
Q |
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| T |
54946918 |
aaaacatatagaagagaagcacgacaccaatgaaatcacaaaacattattacagtaacgtgcgtttgttaggaataaaaaaagacgattttgacatttta |
54947017 |
T |
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| Q |
390 |
taatttataaattgtataaaaaattagattct |
421 |
Q |
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| T |
54947018 |
taatttataaattgtataaaaaattagattct |
54947049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 475 - 514
Target Start/End: Original strand, 54947103 - 54947142
Alignment:
| Q |
475 |
acaaaagtgataattttatcataaaagtgatttatagttt |
514 |
Q |
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| T |
54947103 |
acaaaagtgataattttatcataatagtgatttatagttt |
54947142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 26335628 - 26335576
Alignment:
| Q |
15 |
gggattatacaaatggttgtgaatgcggggattctttttgtttgtgttgtgct |
67 |
Q |
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| T |
26335628 |
gggattatagaaatgggcatgaatgtggggattctttgtgtttgtgttgtgct |
26335576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 26344052 - 26344016
Alignment:
| Q |
43 |
ggattctttttgtttgtgttgtgcttgtcatggcaat |
79 |
Q |
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| T |
26344052 |
ggattctttgtgtttgtgttgtgcttttcatggcaat |
26344016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 26351443 - 26351407
Alignment:
| Q |
43 |
ggattctttttgtttgtgttgtgcttgtcatggcaat |
79 |
Q |
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| T |
26351443 |
ggattctttgtgtttgtgttgtgcttttcatggcaat |
26351407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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