View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2943_high_5 (Length: 282)
Name: NF2943_high_5
Description: NF2943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2943_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 174 - 248
Target Start/End: Complemental strand, 1899848 - 1899774
Alignment:
| Q |
174 |
aattgattctcggttgaaccgttcggtctggtttttaaaacactgatcatcatacaatttccaactaaaaaggag |
248 |
Q |
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| T |
1899848 |
aattgattctcggttcaaccgttcggtctggtttttaaaacactgatcatcatacaatttcctactaaaaaggag |
1899774 |
T |
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Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 1899937 - 1899851
Alignment:
| Q |
14 |
agaaacaatgattatcgcgaataaatcatcaaaaatggaaccgaacattc--aggtatggctcaattggttcaatgattatcaagaa |
98 |
Q |
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| T |
1899937 |
agaaacaatgattatcgcgaataaatcataaaaaatggaacggaacattcaaagtcatggctcaaatggttcaatgattttcaagaa |
1899851 |
T |
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