View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2943_low_12 (Length: 241)

Name: NF2943_low_12
Description: NF2943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2943_low_12
NF2943_low_12
[»] chr2 (8 HSPs)
chr2 (1-238)||(6915284-6915521)
chr2 (41-139)||(10543505-10543603)
chr2 (41-139)||(10471307-10471405)
chr2 (41-139)||(28106207-28106305)
chr2 (41-121)||(27966389-27966469)
chr2 (41-139)||(10859023-10859121)
chr2 (58-120)||(9081351-9081413)
chr2 (48-112)||(10505487-10505551)
[»] chr7 (3 HSPs)
chr7 (41-139)||(15044800-15044898)
chr7 (136-226)||(15043971-15044061)
chr7 (1-39)||(15045570-15045608)
[»] chr5 (1 HSPs)
chr5 (41-139)||(33601026-33601124)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 6915284 - 6915521
Alignment:
Q  1 aatttataccggtattcatgggtagtgctgtcaaaaacacgggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6915284 aatttataccggtattcatgggtagtgctgtcaaaaacacgggggtacaaccacttctggatggtgtagttagttatttgccttgtccgattgaagttag 6915383  T
Q  101 taattatgctcttgaccaatccaagaatgaggagaaggttcagctgactggaagtcccgatgggccccttgtagcattggctttcaagttggagcaaagg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  6915384 taattatgctcttgaccaatccaagaatgaggagaaggttcagctgactggaagtcccgatgggcctcttgtagcattggctttcaagttggagcaaacg 6915483  T
Q  201 aagtttggtcagttaaaatatataagagtttatgaggg 238  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  6915484 aagtttggtcagttaacatatctaagagtttatgaggg 6915521  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 10543603 - 10543505
Alignment:
Q  41 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 139  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| | ||||| ||||||||||||||| | |||||||||||||||||| |||||    
T  10543603 ggggttacaactacttttggatggtgtacttaattatttgccgtgtccaactgaagctagtaattatgctctcgtccaatccaagaatgaggaaaaggt 10543505  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 10471405 - 10471307
Alignment:
Q  41 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 139  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| | ||||| ||||||||||||||| | |||||| ||||||||||| |||||    
T  10471405 ggggctacaactacttttggatggtgtacttaattatttgccgtgtccaactgaagctagtaattatgctctcgtccaatctaagaatgaggaaaaggt 10471307  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 28106207 - 28106305
Alignment:
Q  41 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 139  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| ||||||| |||||||||| ||||||||||||| ||| ||| ||| |||||    
T  28106207 ggggctacaactacttttggatggtgtaattaattatttgccgtgtccaattgaagctagtaattatactcttgaccaatctaagcatggggaaaaggt 28106305  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 27966469 - 27966389
Alignment:
Q  41 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatc 121  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| ||||||| |||||||||| |||||||||||||    
T  27966469 ggggctacaactacttttggatggtgtaattaattatttgccgtgtccaattgaagctagtaattatactcttgaccaatc 27966389  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 10859121 - 10859023
Alignment:
Q  41 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 139  Q
    |||| |||||| |||| |||||||||||  || ||||||||| ||||| | |||||||||||||||| |||| ||| |||| ||||||| ||| |||||    
T  10859121 ggggctacaactacttttggatggtgtaactaattatttgccctgtccaactgaagttagtaattattctctcgacaaatctaagaatggggaaaaggt 10859023  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 9081351 - 9081413
Alignment:
Q  58 tggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaat 120  Q
    ||||||||||| ||| ||||||||| ||||| |||||||  ||||||||||| || |||||||    
T  9081351 tggatggtgtacttaattatttgccgtgtccaattgaagcaagtaattatgcgctcgaccaat 9081413  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 10505551 - 10505487
Alignment:
Q  48 caaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctct 112  Q
    |||| |||| ||||||||||  ||| ||||||||| ||||| | ||||| |||||||||||||||    
T  10505551 caactacttttggatggtgtgcttaattatttgccgtgtccaactgaagctagtaattatgctct 10505487  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 15044898 - 15044800
Alignment:
Q  41 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 139  Q
    |||| ||||||||||||||||||||||| ||| ||||||||| ||||| |||||||||| ||||||||| ||||||||||| || || |||||||||||    
T  15044898 ggggatacaaccacttctggatggtgtacttagttatttgccatgtccaattgaagttaataattatgcccttgaccaatctaataaggaggagaaggt 15044800  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 15044061 - 15043971
Alignment:
Q  136 aggttcagctgactggaagtcccgatgggccccttgtagcattggctttcaagttggagcaaaggaagtttggtcagttaaaatatataag 226  Q
    ||||| ||||| |||| | ||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||| |||| ||||    
T  15044061 aggttgagctgcctggtaatcctgatgggccccttgtagcattggctttcaagttggaggaaagtaagtttggtcagctaacatatttaag 15043971  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 15045608 - 15045570
Alignment:
Q  1 aatttataccggtattcatgggtagtgctgtcaaaaaca 39  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  15045608 aatttataccggtattcatgggtagtgctttcaaaaaca 15045570  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 33601124 - 33601026
Alignment:
Q  41 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 139  Q
    |||| ||||||||||| ||||||||||  ||| | ||||||| ||||| | |||||  | ||||||||||||   |||||| ||||||||||| |||||    
T  33601124 ggggctacaaccacttttggatggtgtgcttaataatttgccgtgtccaactgaagcaactaattatgctctcatccaatctaagaatgaggaaaaggt 33601026  T

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