View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2943_low_2 (Length: 519)
Name: NF2943_low_2
Description: NF2943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2943_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 13 - 504
Target Start/End: Original strand, 50470846 - 50471332
Alignment:
| Q |
13 |
aatataaagcatacataaaccaaatctcataaacagaggcacaccaccatatatatatacatccataatatcaacatggatccaccaaagaaacctaaca |
112 |
Q |
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| T |
50470846 |
aatataaagcatacataaaccaaatctcataaacagaggcacaccaccatatatata--catccataatatcaacatggatccaccaaagaaacctaaca |
50470943 |
T |
|
| Q |
113 |
aaatcagagaaatcgttagacttcaacagatccttaagaaatggagaagagtagccaatacttcaaaaacatacagaagcagcagcagcaacaacaacaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
50470944 |
aaatcagagaaatcgttagacttcaacagatccttaagaaatggagaagagtagccaatacttcaaaaacatacagaagcagcagcatcaac---aacaa |
50471040 |
T |
|
| Q |
213 |
cagtactactagtaaaagcataaagtttttgaaaagaacactttcaatgtccgaacgggaaggaggaggatcaaacaacgcagttcctaaaggctaccta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50471041 |
cagtactactagtaaaagcataaagtttttgaaaagaacactttcaatgtccgaacgggaaggaggaggatcaaacaacgcagttcctaaaggctaccta |
50471140 |
T |
|
| Q |
313 |
gccgtttgtgttggtgtagaccttaacaggtttgttataccaaccgagtatttggctcatcaagcctttcatatattactcagagaagccgaagaagaat |
412 |
Q |
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| T |
50471141 |
gccgtttgtgttggtgtagaccttaacaggtttgttataccaaccgagtatttggctcatcaagcctttcatatattactcagagaagctgaagaagaat |
50471240 |
T |
|
| Q |
413 |
ttgggtttgaacaaactggtgttctgagaattccttgtgaagtttcagtgtttgagagtatcttgaagatggttgaaggaaaggatagattt |
504 |
Q |
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| T |
50471241 |
ttgggtttgaacaaactggtgttctgagaattccttgtgaagtttcagtgtttgagagtatcttgaagatggttgaaggaaaggatagattt |
50471332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 311 - 490
Target Start/End: Complemental strand, 1197116 - 1196937
Alignment:
| Q |
311 |
tagccgtttgtgttggtgtagaccttaacaggtttgttataccaaccgagtatttggctcatcaagcctttcatatattactcagagaagccgaagaaga |
410 |
Q |
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|||| ||||||||||| | ||| ||||| ||||| | |||||||| || ||||||| ||||||||| ||||| || | | |||||||| |||||||| |
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| T |
1197116 |
tagctgtttgtgttggagaagagcttaagaggttcatcataccaactgaatatttgggtcatcaagcttttcagattcttttgagagaagctgaagaaga |
1197017 |
T |
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| Q |
411 |
atttgggtttgaacaaactggtgttctgagaattccttgtgaagtttcagtgtttgagagtatcttgaagatggttgaag |
490 |
Q |
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| T |
1197016 |
atttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttgagagtattttgaagatggttgaag |
1196937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 1197328 - 1197267
Alignment:
| Q |
99 |
aaagaaacctaacaaaatcagagaaatcgttagacttcaacagatccttaagaaatggagaa |
160 |
Q |
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||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1197328 |
aaagaaatctaacaaaattagagaaattgttagacttcaacagatccttaagaaatggagaa |
1197267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 394 - 490
Target Start/End: Original strand, 7289549 - 7289645
Alignment:
| Q |
394 |
agagaagccgaagaagaatttgggtttgaacaaactggtgttctgagaattccttgtgaagtttcagtgtttgagagtatcttgaagatggttgaag |
490 |
Q |
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|||||||| |||||||||||||||||| ||||| |||||||| |||| |||| ||||||||| || |||||| |||| |||||||||||||||| |
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| T |
7289549 |
agagaagctgaagaagaatttgggtttcaacaagctggtgttttgaggattctttgtgaagtctctacttttgagtgtattttgaagatggttgaag |
7289645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 7289254 - 7289303
Alignment:
| Q |
99 |
aaagaaacctaacaaaatcagagaaatcgttagacttcaacagatcctta |
148 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
7289254 |
aaagaaatctaacaaaattagagaaatcgttagacttcaacaaatcctta |
7289303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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