View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2943_low_4 (Length: 467)
Name: NF2943_low_4
Description: NF2943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2943_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 10 - 450
Target Start/End: Original strand, 37186402 - 37186842
Alignment:
| Q |
10 |
acatcatcatcaactttgatatagaagtcagcatcccacaagttaacagcagtggcaaaataagtctttgtctttgctgataattcaaggtatccttcaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37186402 |
acatcatcatcaactttgatatagaagtcagcatcccacaagttaacagcagtggcaaaataggtctttgtctttgctgataattcaaggtatccttcaa |
37186501 |
T |
|
| Q |
110 |
catgatcctgcacaatcaaaacacaaatttgaaaacttattgctttttctttcctccttcaaatcaatgtgatcatactatattttcaaatgttattgaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37186502 |
catgatcctgcacaatcaaaacacaaatttgaaaacttattgctttttctttcctccttcaaatcaatgtgatcatactatattttcaaatgttattgaa |
37186601 |
T |
|
| Q |
210 |
gtgatcattaccagcctcaggaaatctccatgtttactatcttctgcttcaatggctctatctaggataccacctgtcgtggcactagagaaagaagtnn |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37186602 |
gtgatcattaccagcctcaggaaatctccatgtttactatcttctgcttcaatggctctatctaggataccacctgtcgtggcactagagaaaggagtaa |
37186701 |
T |
|
| Q |
310 |
nnnnnnnnntttataagtatcttgaactcacattttaggtcaaggggctaaaaacaaacttcgagataattataggaacttaaatcgtcgaaactataga |
409 |
Q |
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| T |
37186702 |
aaaaataaatttataagtatcttgaactcacattttaggtcaaggggctaaaaacaaacttcgagataattataggaacttaaatcgtcgaaactataga |
37186801 |
T |
|
| Q |
410 |
gatgagatggcttacccatgaccaattacaaagcggatgat |
450 |
Q |
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| T |
37186802 |
gatgagatggcttacccatgaccaattacaaagcggatgat |
37186842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 17124791 - 17124686
Alignment:
| Q |
10 |
acatcatcatcaactttgatatagaagtcagcatcccacaagttaacagcagtggcaaaataagtctttgtctttgctgataattcaaggtatccttcaa |
109 |
Q |
| |
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||||| ||||||||||||| ||| || ||||||||||| ||| | |||||||||||||| || ||||||||||||||||| ||||||||||||||||||| |
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| T |
17124791 |
acatcgtcatcaactttgacataaaaatcagcatcccataagctcacagcagtggcaaagtatgtctttgtctttgctgacaattcaaggtatccttcaa |
17124692 |
T |
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| Q |
110 |
catgat |
115 |
Q |
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|||||| |
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|
| T |
17124691 |
catgat |
17124686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 216 - 298
Target Start/End: Complemental strand, 17124521 - 17124439
Alignment:
| Q |
216 |
attaccagcctcaggaaatctccatgtttactatcttctgcttcaatggctctatctaggataccacctgtcgtggcactaga |
298 |
Q |
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||||||||||||| ||||||||||| || ||||| ||||||||||| ||||| ||||||||||| |||| || |||||||| |
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| T |
17124521 |
attaccagcctcaaaaaatctccatgctttctatcctctgcttcaatagctctgtctaggatacctcctgatgtagcactaga |
17124439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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