View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2943_low_5 (Length: 409)
Name: NF2943_low_5
Description: NF2943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2943_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 15 - 409
Target Start/End: Original strand, 6915476 - 6915870
Alignment:
| Q |
15 |
agcaaaggaagtttggtcagttaacatatctaagagtttatgagggcgtcattcggaagggtgattttattgttaatgttagcactggaaagaaaattaa |
114 |
Q |
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| T |
6915476 |
agcaaacgaagtttggtcagttaacatatctaagagtttatgagggtgtcattcggaagggtgattttattgttaatgttagcactggaaagaaaattaa |
6915575 |
T |
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| Q |
115 |
ggttcctcgcttagttgagatgcattctaatgagatgaatgacattgaagaggcccatgctggccaaatagttgctgtatttggtgttgattgtgcatcc |
214 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6915576 |
ggttcctcgcttagttcagatgcattctaatgagatgaacgacattgaagaggcccatgctggccaaatagttgctgtatttggtgttgattgtgcatcc |
6915675 |
T |
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| Q |
215 |
ggcgatacatttactgatgggtcggttaaatacacaatgacttctatgaatgttcctgagcccgtgatgtcattagctgtacagccagtctcaaaagatt |
314 |
Q |
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| T |
6915676 |
agcgatacatttactgatgggtcggttaaatacacaatgacttctatgaatgttcctgagcccgtgatgtcattagctgtacagccagtctcaaaagatt |
6915775 |
T |
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| Q |
315 |
ctggagggaaattttcaaaagctttgaaccgcttccaaagagaggatcctactttccgtgttagcttggacccagagagtgggcaaacaatcatt |
409 |
Q |
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| T |
6915776 |
ctggagggaaattttcaaaagctttgaaccgcttccaaagagaggatcctacttttcgtgttagcttggacccagagagtgggcaaacaatcatt |
6915870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 218 - 322
Target Start/End: Complemental strand, 15040345 - 15040241
Alignment:
| Q |
218 |
gatacatttactgatgggtcggttaaatacacaatgacttctatgaatgttcctgagcccgtgatgtcattagctgtacagccagtctcaaaagattctg |
317 |
Q |
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| T |
15040345 |
gatacttttactgatgggtctgttaaatatacaatgacttcaatgagtgttcctgagcctgtgatgtcattagctgtacagccagtctcaaaagattctg |
15040246 |
T |
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| Q |
318 |
gaggg |
322 |
Q |
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||||| |
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| T |
15040245 |
gaggg |
15040241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 326 - 399
Target Start/End: Complemental strand, 15040137 - 15040064
Alignment:
| Q |
326 |
ttttcaaaagctttgaaccgcttccaaagagaggatcctactttccgtgttagcttggacccagagagtgggca |
399 |
Q |
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| T |
15040137 |
ttttcaaaagctttgaaccgcttccaaagagaggatcctactttccgtgttggcttggacccagagagtgggca |
15040064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 15041895 - 15041840
Alignment:
| Q |
158 |
attgaagaggcccatgctggccaaatagttgctgtatttggtgttgattgtgcatc |
213 |
Q |
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| T |
15041895 |
attgatgaggctcatgctggccaaatagttgctgtatttggtgttgattgtgcatc |
15041840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 15043854 - 15043792
Alignment:
| Q |
46 |
aagagtttatgagggcgtcattcggaagggtgattttattgttaatgttagcactggaaagaa |
108 |
Q |
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| T |
15043854 |
aagaatttatgagggcgtcattcggaagggtgatttcattattaatgttaacactggcaagaa |
15043792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 43895598 - 43895529
Alignment:
| Q |
302 |
gtctcaaaagattctggagggaaattttcaaaagctttgaaccgcttccaaagagaggatcctactttcc |
371 |
Q |
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| T |
43895598 |
gtctcaaaagattctggagggcaattttcaactgctttgaatggttttcaaagaaaggatcctactttcc |
43895529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 44306022 - 44305953
Alignment:
| Q |
302 |
gtctcaaaagattctggagggaaattttcaaaagctttgaaccgcttccaaagagaggatcctactttcc |
371 |
Q |
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| T |
44306022 |
gtctcaaaagattctggagggcaattttcaagtgctttgaatggttttcaaagaaaggatcctactttcc |
44305953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 35856854 - 35856932
Alignment:
| Q |
164 |
gaggcccatgctggccaaatagttgctgtatttggtgttgattgtgcatccggcgatacatttactgatgggtcggtta |
242 |
Q |
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| T |
35856854 |
gaggctcatgctggacaaattgttgttgtatgtgatgttgattgtgcaccaggagaaacatttactgatgggtctgtta |
35856932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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