View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2944_high_1 (Length: 354)

Name: NF2944_high_1
Description: NF2944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2944_high_1
NF2944_high_1
[»] chr3 (4 HSPs)
chr3 (19-285)||(48236124-48236390)
chr3 (294-337)||(48236418-48236461)
chr3 (183-241)||(25252041-25252099)
chr3 (182-242)||(43381176-43381236)
[»] chr6 (1 HSPs)
chr6 (182-258)||(2732920-2732996)
[»] chr7 (1 HSPs)
chr7 (182-246)||(1110409-1110473)
[»] scaffold0491 (1 HSPs)
scaffold0491 (201-245)||(4388-4432)
[»] chr8 (3 HSPs)
chr8 (201-245)||(18737689-18737733)
chr8 (181-243)||(42843363-42843425)
chr8 (201-245)||(18747547-18747591)
[»] chr5 (1 HSPs)
chr5 (185-265)||(43283418-43283498)
[»] chr4 (1 HSPs)
chr4 (181-256)||(415131-415206)
[»] chr1 (4 HSPs)
chr1 (181-242)||(6025970-6026031)
chr1 (181-214)||(33651683-33651716)
chr1 (181-242)||(44417797-44417858)
chr1 (182-214)||(15592684-15592716)


Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 48236124 - 48236390
Alignment:
Q  19 gtaaggaggaaaaaggatattgtcataattgtgtaaacatattcttgtcataacaaaaagatgagtggcagtcaaagtttaagaagtggaaaaaggtaaa 118  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48236124 gtaaggaggaaaaagtatattgtcataattgtgtaaacatattcttgtcataacaaaaagatgagtggcagtcaaagtttaagaagtggaaaaaggtaaa 48236223  T
Q  119 caaacgttgtcaatagcaatttgttcaaactccgctgcataacaatgttatagcgtgctgctactatttgacaacattttacactaaatagcatatcccg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48236224 caaacgttgtcaatagcaatttgttcaaactccgctgcataacaatgttatagcgtgctgctactatttgacaacattttacactaaatagcatatcccg 48236323  T
Q  219 aaataacagcgatttgttcaaatttcgctatgttatagtgccatagcaccactataaccgttatatt 285  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48236324 aaataacagtgatttgttcaaatttcgctatgttatagtgccatagcaccactataaccgttatatt 48236390  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 294 - 337
Target Start/End: Original strand, 48236418 - 48236461
Alignment:
Q  294 gggaaaatttgcattattaaatggttaatatttagggtacaaag 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  48236418 gggaaaatttgcattattaaatggttaatatttagggtacaaag 48236461  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 25252099 - 25252041
Alignment:
Q  183 tatttgacaacattttacactaaatagcatatcccgaaataacagcgatttgttcaaat 241  Q
    |||| |||||||||||  |||||||||| |||| ||||| || ||||||||||||||||    
T  25252099 tattagacaacattttgtactaaatagcgtatcacgaaacaagagcgatttgttcaaat 25252041  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 43381236 - 43381176
Alignment:
Q  182 ctatttgacaacattttacactaaatagcatatcccgaaataacagcgatttgttcaaatt 242  Q
    |||||||||||||||||  | ||||| ||||||| || ||||| |||||||| ||||||||    
T  43381236 ctatttgacaacattttgtattaaattgcatatcgcggaataatagcgatttattcaaatt 43381176  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 2732996 - 2732920
Alignment:
Q  182 ctatttgacaacattttacactaaatagcatatcccgaaataacagcgatttgttcaaatttcgctatgttatagtg 258  Q
    |||||||||||||||||  ||||||||||||||| | ||| || ||||||||||||||||||| ||| | |||||||    
T  2732996 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctatagtg 2732920  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 1110409 - 1110473
Alignment:
Q  182 ctatttgacaacattttacactaaatagcatatcccgaaataacagcgatttgttcaaatttcgc 246  Q
    ||||||||||||| ||   ||||||||||||||||||||| || ||| |||||||||||||||||    
T  1110409 ctatttgacaacacttagaactaaatagcatatcccgaaacaatagcaatttgttcaaatttcgc 1110473  T

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Target: scaffold0491 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 4432 - 4388
Alignment:
Q  201 actaaatagcatatcccgaaataacagcgatttgttcaaatttcg 245  Q
    ||||||||||||||||||||| || ||| ||||||||||||||||    
T  4432 actaaatagcatatcccgaaacaatagcaatttgttcaaatttcg 4388  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 18737733 - 18737689
Alignment:
Q  201 actaaatagcatatcccgaaataacagcgatttgttcaaatttcg 245  Q
    ||||||||||||||||||||| || ||| ||||||||||||||||    
T  18737733 actaaatagcatatcccgaaacaatagcaatttgttcaaatttcg 18737689  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 42843425 - 42843363
Alignment:
Q  181 actatttgacaacattttacactaaatagcatatcccgaaataacagcgatttgttcaaattt 243  Q
    |||||||||||||| |||| ||| |||||| ||||||| || || ||| ||||||||||||||    
T  42843425 actatttgacaacaatttatacttaatagcttatcccggaacaatagcaatttgttcaaattt 42843363  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 18747591 - 18747547
Alignment:
Q  201 actaaatagcatatcccgaaataacagcgatttgttcaaatttcg 245  Q
    |||||||||||||||||||||  | ||| ||||||||||||||||    
T  18747591 actaaatagcatatcccgaaactatagcaatttgttcaaatttcg 18747547  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 265
Target Start/End: Original strand, 43283418 - 43283498
Alignment:
Q  185 tttgacaacattttacactaaatagcatatcccgaaataacagcgatttgttcaaatttcgctatgttatagtgccatagc 265  Q
    ||||||||||||||   | ||||||| |||  || || |||||||||||||||||||| ||||||| |||||||| |||||    
T  43283418 tttgacaacattttgtcccaaatagcgtattgcggaacaacagcgatttgttcaaattacgctatgctatagtgctatagc 43283498  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 415206 - 415131
Alignment:
Q  181 actatttgacaacattttacactaaatagcatatcccgaaataacagcgatttgttcaaatttcgctatgttatag 256  Q
    ||||||| ||||||||||  ||||||||||| ||| ||||| || ||||| |||||||||||  |||||| |||||    
T  415206 actatttcacaacattttgtactaaatagcaaatcacgaaacaatagcgacttgttcaaattctgctatgctatag 415131  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 6025970 - 6026031
Alignment:
Q  181 actatttgacaacattttacactaaatagcatatcccgaaataacagcgatttgttcaaatt 242  Q
    ||||||||||||||||||  ||||||||||||||| || || || | | |||||||||||||    
T  6025970 actatttgacaacattttgtactaaatagcatatcgcggaacaataactatttgttcaaatt 6026031  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 33651716 - 33651683
Alignment:
Q  181 actatttgacaacattttacactaaatagcatat 214  Q
    ||||||||||||||||||| ||||||||||||||    
T  33651716 actatttgacaacattttatactaaatagcatat 33651683  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 44417858 - 44417797
Alignment:
Q  181 actatttgacaacattttacactaaatagcatatcccgaaataacagcgatttgttcaaatt 242  Q
    |||||||||||||| ||| ||||||||| |||||||| ||| || | || ||||||||||||    
T  44417858 actatttgacaacactttgcactaaataacatatcccaaaacaataacggtttgttcaaatt 44417797  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 15592684 - 15592716
Alignment:
Q  182 ctatttgacaacattttacactaaatagcatat 214  Q
    ||||||||||||||||||||| |||||||||||    
T  15592684 ctatttgacaacattttacaccaaatagcatat 15592716  T

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