View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2944_low_2 (Length: 460)
Name: NF2944_low_2
Description: NF2944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2944_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Complemental strand, 1403075 - 1402639
Alignment:
| Q |
18 |
catgcatcatcaaaccttgcatagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagcaaccatgataggttatatctgctttg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1403075 |
catgcatcatcaaaccttgcatagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagcaaccatgatcggttatatctgctttg |
1402976 |
T |
|
| Q |
118 |
ttcaacctttttaagcttgagcatcttaattgttgtttacgatataaagaagagaaacgagcggaagggtcaaagtgtatattagatagttgaagatctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1402975 |
ttcaacctttttaagcttgagcatcttaattgttgtttacgatataaagaagagaaacgagcggaagggtcaaagtgtatattagatagttgaagatctt |
1402876 |
T |
|
| Q |
218 |
caagaagtggacatgcatccagaagaaacgtaaattcatgttgatgatgaagataaatgtctttcaaatctagtgttttgagtgagggaaaattataacg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
1402875 |
caagaagtggacatgcatccagaagaaacgtaaattcatgttgatgatgaagataaatgtctttcaaatgtagtgttttgagtgagggaaaattataatg |
1402776 |
T |
|
| Q |
318 |
agaattagcatccttaaaaaaccaaaaccaacggagtttgagaacaacaagggttgtacaagttaatatactaataggcaaactaggggctaatgttagt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1402775 |
agaattagcatccttaaaaaaccaaaaccaacggagtttgagaacaacaagggttgtacaagttaatatactaataggcaaactaggggctaatgttagt |
1402676 |
T |
|
| Q |
418 |
ttcctaatcaacgtattatggtaagttgttcatctca |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1402675 |
ttcctaatcaacgtattatggtaagttgttcttctca |
1402639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Complemental strand, 1399380 - 1398975
Alignment:
| Q |
18 |
catgcatcatcaaaccttgcatagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagcaaccatgataggttatatctgctttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||| |
|
|
| T |
1399380 |
catgcatcatcaaaccttgcatagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagcaatcatggtcggttatatctgctttg |
1399281 |
T |
|
| Q |
118 |
ttcaacctttttaagcttgagcatcttaattgttgtttacgatataaagaagagaaacgagcggaagggtcaaagtgtatattagatagttgaagatctt |
217 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1399280 |
ttcaacctttttaagcttgagccgcttaattgttggttacgatatagagaagagaaacgagcggaagggccaaagtgtatattagatagttgaagatctt |
1399181 |
T |
|
| Q |
218 |
caagaagtggacatgcatccagaagaaacgtaaattcatgttgatgatgaagataaatgtctttcaaatctagtgttttgagtgagggaaaattataacg |
317 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| || |||||||||||||||||| | |
|
|
| T |
1399180 |
caagaagtggacaagcatccagaagaaacgtaaattcatgttgatgatgaaggtaaatgtctttcaaatgtagtgtctttagtgagggaaaattataatg |
1399081 |
T |
|
| Q |
318 |
agaattagcatccttaaaaaaccaaaaccaacggagtttgagaacaacaagggttgtacaagttaatatactaataggcaaactaggggctaatgttagt |
417 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1399080 |
agaattagcatccataaagaaccaaaaccaacggagtttgagaacaacaagggttgtacaagttaatatactaataggcaaactaggggctaatgttagt |
1398981 |
T |
|
| Q |
418 |
ttccta |
423 |
Q |
| |
|
|||||| |
|
|
| T |
1398980 |
ttccta |
1398975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 195 - 378
Target Start/End: Complemental strand, 820837 - 820654
Alignment:
| Q |
195 |
tatattagatagttgaagatcttcaagaagtggacatgcatccagaagaaacgtaaattcatgttgatgatgaa-gataaatgtctttcaaatctagtgt |
293 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||| || ||||| | | | | || | ||| || | || ||||| |||||||||||| |||||| |
|
|
| T |
820837 |
tatattagatagttgaagatcttctagaactggacatgcgtctagaagcatcatcagttgacattgttggtcaaagataa-tgtctttcaaatgtagtgt |
820739 |
T |
|
| Q |
294 |
tttgagtgagggaaaattataacgagaattagcatccttaaaaaaccaaaaccaacggagtttgagaacaacaagggttgtacaa |
378 |
Q |
| |
|
|||||||||||| |||||| | ||||| |||| || || | || |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
820738 |
tttgagtgagggtaaattaagatgagaacaagcacccctagagaaacaaaaccaacggagcttgagaacaacaagggttgtacaa |
820654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 974971 - 975025
Alignment:
| Q |
38 |
atagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagca |
92 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
974971 |
atagttttatgcgtagaaactccaaatttgaaagtgatttcaccggaaaatagca |
975025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 203 - 305
Target Start/End: Original strand, 975127 - 975229
Alignment:
| Q |
203 |
atagttgaagatcttcaagaagtggacatgcatccagaagaaacgtaaattcatgttgatgatgaagataaatgtctttcaaatctagtgttttgagtga |
302 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||| ||||| | | |||| ||| |||| |||| || ||||| |||||||||| ||| ||||| ||||| |
|
|
| T |
975127 |
atagttgaagatcttcaagaactggacatccatctagaagcatcataaaatcacgttgctgatcaaagtaaatctctttcaaatgtagggtttttagtga |
975226 |
T |
|
| Q |
303 |
ggg |
305 |
Q |
| |
|
||| |
|
|
| T |
975227 |
ggg |
975229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 965702 - 965756
Alignment:
| Q |
38 |
atagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagca |
92 |
Q |
| |
|
||||||||||| ||| ||| |||| ||||||||||||||||||| ||||||||| |
|
|
| T |
965702 |
atagttgtatgtgtaaaaattccaaatttgaaagtgatttcaccggaaaatagca |
965756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 409865 - 409824
Alignment:
| Q |
38 |
atagttgtatgcgtagaaactccacatttgaaagtgatttca |
79 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||| ||||||| |
|
|
| T |
409865 |
atagttgtatacgtagaaactccaaatttgaaagcgatttca |
409824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 10117267 - 10117318
Alignment:
| Q |
28 |
caaaccttgcatagttgtatgcgtagaaactccacatttgaaagtgatttca |
79 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
10117267 |
caaaccttgaatagttgtatgcctagaaactccaaatttgaaagtgctttca |
10117318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 1446151 - 1446197
Alignment:
| Q |
33 |
cttgcatagttgtatgcgtagaaactccacatttgaaagtgatttca |
79 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1446151 |
cttgtatagttttatgcgtagaaactccacatttgaaagtgctttca |
1446197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 1459552 - 1459600
Alignment:
| Q |
31 |
accttgcatagttgtatgcgtagaaactccacatttgaaagtgatttca |
79 |
Q |
| |
|
|||||| |||||| |||| |||||||||||||||||||||||| ||||| |
|
|
| T |
1459552 |
accttggatagttttatgtgtagaaactccacatttgaaagtgctttca |
1459600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University