View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2944_low_5 (Length: 293)
Name: NF2944_low_5
Description: NF2944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2944_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 14511325 - 14511120
Alignment:
| Q |
18 |
catgaaacctatggttggcatggtgctggataattcagtttggattgtcggtaatggggagaagattaatttttggatggacaactagttaggtgctccc |
117 |
Q |
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| T |
14511325 |
catgaaatctatggttggcatggtgctggataattcagtttggattgtcggtaatggggagaagattaatttttggacggacaactatttaggtgctccc |
14511226 |
T |
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| Q |
118 |
ttagttgatactttgcagatttcggtggagttttgtttgagacagttcacgtggctattcgtaatggtcagattgagcttcctgcgttcgtgcgggataa |
217 |
Q |
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| T |
14511225 |
ttagttgatactttgcagatttcggtggagttttgtttgagacagttcacatggctattcgtaatggtcagattgagcttcctgtgttcgtgcgggataa |
14511126 |
T |
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| Q |
218 |
ttctac |
223 |
Q |
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|||||| |
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| T |
14511125 |
ttctac |
14511120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 274
Target Start/End: Complemental strand, 8570186 - 8570147
Alignment:
| Q |
235 |
agaacaatttcaatgaagggattgcgaagaggagcgattg |
274 |
Q |
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| T |
8570186 |
agaacaatttcgatgaagggattgcgaagaggagcgattg |
8570147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 54189027 - 54189066
Alignment:
| Q |
235 |
agaacaatttcaatgaagggattgcgaagaggagcgattg |
274 |
Q |
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| T |
54189027 |
agaacaatttcgatgaagggattgcgaagaggagcgattg |
54189066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 3368120 - 3368159
Alignment:
| Q |
235 |
agaacaatttcaatgaagggattgcgaagaggagcgattg |
274 |
Q |
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| T |
3368120 |
agaacaatttcgatgaagggattgcgaagaggagcgattg |
3368159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 274
Target Start/End: Complemental strand, 28696146 - 28696107
Alignment:
| Q |
235 |
agaacaatttcaatgaagggattgcgaagaggagcgattg |
274 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |
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| T |
28696146 |
agaacaatttcgatgaagggattgcgaagaggagcgattg |
28696107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 14271944 - 14272003
Alignment:
| Q |
159 |
acagttcacgtggctattcgtaatggtcagattgagcttcctgcgttcgtgcgggataat |
218 |
Q |
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|||||||| ||||||||| ||||||||||||||||||| ||| || |||||||||||| |
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| T |
14271944 |
acagttcaaatggctattcacaatggtcagattgagcttcttgcttttgtgcgggataat |
14272003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 15143423 - 15143382
Alignment:
| Q |
52 |
tcagtttggattgtcggtaatggggagaagattaatttttgg |
93 |
Q |
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|||||||||||||| |||| ||| |||||||||||||||||| |
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| T |
15143423 |
tcagtttggattgttggtactggtgagaagattaatttttgg |
15143382 |
T |
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