View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2945_high_1 (Length: 447)

Name: NF2945_high_1
Description: NF2945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2945_high_1
NF2945_high_1
[»] chr3 (4 HSPs)
chr3 (194-430)||(44497416-44497652)
chr3 (187-430)||(29829827-29830063)
chr3 (193-317)||(2063950-2064074)
chr3 (194-226)||(14539905-14539937)
[»] chr8 (3 HSPs)
chr8 (206-430)||(28994077-28994305)
chr8 (194-247)||(16296575-16296628)
chr8 (194-247)||(16304277-16304330)
[»] chr6 (2 HSPs)
chr6 (194-430)||(1606083-1606313)
chr6 (194-229)||(12190872-12190907)
[»] chr1 (5 HSPs)
chr1 (198-359)||(22049236-22049397)
chr1 (194-247)||(22894339-22894392)
chr1 (280-316)||(48580683-48580719)
chr1 (196-226)||(2351667-2351697)
chr1 (189-221)||(50442496-50442528)
[»] chr7 (5 HSPs)
chr7 (1-79)||(7144080-7144158)
chr7 (119-193)||(7144198-7144272)
chr7 (194-252)||(41120826-41120884)
chr7 (194-226)||(5356701-5356733)
chr7 (193-221)||(8291334-8291362)
[»] chr2 (5 HSPs)
chr2 (194-317)||(19866977-19867100)
chr2 (194-317)||(19871878-19872001)
chr2 (194-317)||(19876779-19876902)
chr2 (194-317)||(36585660-36585783)
chr2 (280-317)||(19862408-19862445)
[»] chr5 (5 HSPs)
chr5 (193-228)||(14083994-14084029)
chr5 (193-225)||(5323092-5323124)
chr5 (206-250)||(39289023-39289067)
chr5 (206-250)||(39384269-39384313)
chr5 (193-221)||(39384308-39384336)
[»] scaffold0041 (1 HSPs)
scaffold0041 (194-252)||(102265-102323)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 194 - 430
Target Start/End: Complemental strand, 44497652 - 44497416
Alignment:
194 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
44497652 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggt 44497553  T
294 ttgtacgggttcgggtctttcgggccacgggtttatcgggcgggtatgtgcggttttgaagattcagnnnnnnnnnnnnnnncagtatagtatcctccga 393  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||               |||||||||||||||  |    
44497552 ttgtacgggttcgggtctttcgggtcacgggtttatcgggtgggtatgagcggttttgaagattcagaaaaaaatgaaaaaacagtatagtatcctcaaa 44497453  T
394 tctgtgtatgcatcaacacaccaaccaagatgaagaa 430  Q
    ||| ||||| |||||||||||||||||||||||||||    
44497452 tctatgtattcatcaacacaccaaccaagatgaagaa 44497416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 187 - 430
Target Start/End: Complemental strand, 29830063 - 29829827
Alignment:
187 atatatttaggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttctt 286  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
29830063 atatatataggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttccacccatttttctt 29829964  T
287 cttcggtttgtacgggttcgggtctttcgggccacgggtttatcgggcgggtatgtgcggttttgaagattcag--nnnnnnnnnnnnnnncagtatagt 384  Q
    |||||||||||||||||||||||         ||||||||||||||| |||||||||| |||||||||||||||                 ||||||| |    
29829963 cttcggtttgtacgggttcgggt---------cacgggtttatcgggtgggtatgtgcagttttgaagattcagaaaaaaaaatgaaaaaacagtataat 29829873  T
385 atcctccgatctgtgtatgcatcaacacaccaaccaagatgaagaa 430  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
29829872 atcctcagatctgtgtatgcatcaacacaccaaccaagatgaagaa 29829827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 317
Target Start/End: Original strand, 2063950 - 2064074
Alignment:
193 ttaggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcgg 292  Q
    ||||||||||||| |||||||||||||| |  ||   || ||||| | ||||||||||||||||||||   ||||||||  ||    |||||||||||||    
2063950 ttaggggtggacaacgggcgggttcgggtctgaaagctcgacccagctcaacccgcggtttgtgtgtacagacccatttaaactagcttttcttcttcgg 2064049  T
293 tttgtacgggttcgggtctttcggg 317  Q
    |||| ||||||||||||||||||||    
2064050 tttgcacgggttcgggtctttcggg 2064074  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 14539937 - 14539905
Alignment:
194 taggggtggacatcgggcgggttcgggcccaaa 226  Q
    |||||||||||||||||||||||||| ||||||    
14539937 taggggtggacatcgggcgggttcggacccaaa 14539905  T

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Target: chr8 (Bit Score: 143; Significance: 6e-75; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 206 - 430
Target Start/End: Complemental strand, 28994305 - 28994077
Alignment:
206 tcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggtttgtacgggttc 305  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
28994305 tcgggagggttcgggcccaaaccttcaacccataccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggtttgtacgggttt 28994206  T
306 gggtctttcgggccacgggtttatcgggcgggtatgtgcggttttgaagattcag----nnnnnnnnnnnnnnncagtatagtatcctccgatctgtgta 401  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||                   ||||||||||||||||||||||||||    
28994205 gggtctttcgggccacaggtttatcgagcgggtatgtgcggttttgaagattcagagaaaaaaaaatgaaaaaacagtatagtatcctccgatctgtgta 28994106  T
402 tgcatcaacacaccaaccaagatgaagaa 430  Q
    || ||||||||||||||||||||||||||    
28994105 tgtatcaacacaccaaccaagatgaagaa 28994077  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 16296575 - 16296628
Alignment:
194 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccg 247  Q
    |||||||||||||||||||||||||||||||||    || ||||||||||||||    
16296575 taggggtggacatcgggcgggttcgggcccaaagtggcagcccatcccaacccg 16296628  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 16304277 - 16304330
Alignment:
194 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccg 247  Q
    |||||||||||||||||||||||||||||||||    || ||||||||||||||    
16304277 taggggtggacatcgggcgggttcgggcccaaagtggcagcccatcccaacccg 16304330  T

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Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 194 - 430
Target Start/End: Complemental strand, 1606313 - 1606083
Alignment:
194 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1606313 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggt 1606214  T
294 ttgtacgggttcgggtctttcgggccacgggtttatcgggcgggtatgtgcggttttgaagattcag---nnnnnnnnnnnnnnncagtatagtatcctc 390  Q
    ||||||||||| ||||         ||||||||||||||| ||||||||||||||||||||||||||                  |||||||||||||||    
1606213 ttgtacgggtttgggt---------cacgggtttatcgggtgggtatgtgcggttttgaagattcagaaaaaaaaaatgaaaaaacagtatagtatcctc 1606123  T
391 cgatctgtgtatgcatcaacacaccaaccaagatgaagaa 430  Q
     |||||||||||||||||||||||||||||||||||||||    
1606122 agatctgtgtatgcatcaacacaccaaccaagatgaagaa 1606083  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 229
Target Start/End: Complemental strand, 12190907 - 12190872
Alignment:
194 taggggtggacatcgggcgggttcgggcccaaacct 229  Q
    ||||||||||||||||||||||||||| ||||||||    
12190907 taggggtggacatcgggcgggttcgggtccaaacct 12190872  T

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Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 198 - 359
Target Start/End: Complemental strand, 22049397 - 22049236
Alignment:
198 ggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggtttgt 297  Q
    |||||||||||||||||||| ||||| |||| |||||| |||||||| ||| |||||||| |||  |||||||||| ||||||| |||||||||||||||    
22049397 ggtggacatcgggcgggttcaggcccgaaccctcaacctatcccaactcgcagtttgtgtatagagacccatttctgcccatttctcttcttcggtttgt 22049298  T
298 acgggttcgggtctttcgggccacgggtttatcgggcgggtatgtgcggttttgaagattca 359  Q
    ||  |||||||||||| |   || |||||||||||| || ||||| ||||||||||||||||    
22049297 acaagttcgggtcttttgtatcatgggtttatcgggtggatatgtccggttttgaagattca 22049236  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 22894339 - 22894392
Alignment:
194 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccg 247  Q
    |||||||||||||||||||||||||||||||||    || ||||||||||||||    
22894339 taggggtggacatcgggcgggttcgggcccaaagtggcagcccatcccaacccg 22894392  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 48580683 - 48580719
Alignment:
280 ttttcttcttcggtttgtacgggttcgggtctttcgg 316  Q
    ||||||||||||||||| |||||||||||||||||||    
48580683 ttttcttcttcggtttgcacgggttcgggtctttcgg 48580719  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 226
Target Start/End: Original strand, 2351667 - 2351697
Alignment:
196 ggggtggacatcgggcgggttcgggcccaaa 226  Q
    |||||||||||||||||||||||||||||||    
2351667 ggggtggacatcgggcgggttcgggcccaaa 2351697  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 50442528 - 50442496
Alignment:
189 atatttaggggtggacatcgggcgggttcgggc 221  Q
    |||| ||||||||||||||||||||||||||||    
50442528 atatgtaggggtggacatcgggcgggttcgggc 50442496  T

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Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 7144080 - 7144158
Alignment:
1 gctcagacaaccaagcaagaagcgatggatgaaaagcttaatttgatactcaatctaatgagtagtagaaacacttggg 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
7144080 gctcagacaaccaagcaagaagcgatggatgaaaagcttaatttgataatcaatctgatgagtagtagaaacacttggg 7144158  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 7144198 - 7144272
Alignment:
119 gtaactttaatcaacaatattaacgtgtattcaatgcttattctcattatcttttatgcaagctatgtatatatt 193  Q
    |||||||||||||||||||||||| |||||| |||| |||||||||  |||||||||||||||||||||||||||    
7144198 gtaactttaatcaacaatattaacttgtatttaatgtttattctcaaaatcttttatgcaagctatgtatatatt 7144272  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 41120884 - 41120826
Alignment:
194 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtt 252  Q
    ||||||||||||||||||||||||||| ||||| |  | ||||| ||||||||||||||    
41120884 taggggtggacatcgggcgggttcgggtccaaagcacccacccagcccaacccgcggtt 41120826  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 5356701 - 5356733
Alignment:
194 taggggtggacatcgggcgggttcgggcccaaa 226  Q
    |||||||||||||| ||||||||||||||||||    
5356701 taggggtggacatcaggcgggttcgggcccaaa 5356733  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 8291334 - 8291362
Alignment:
193 ttaggggtggacatcgggcgggttcgggc 221  Q
    |||||||||||||||||||||||||||||    
8291334 ttaggggtggacatcgggcgggttcgggc 8291362  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 317
Target Start/End: Complemental strand, 19867100 - 19866977
Alignment:
194 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggt 293  Q
    |||||||||||| |||||||||||||| |  ||   || ||||| | ||||||||||||||||||||   ||||||||   |    ||||||||||||||    
19867100 taggggtggacaacgggcgggttcgggtctgaaagctcgacccagctcaacccgcggtttgtgtgtacagacccatttaagctagcttttcttcttcggt 19867001  T
294 ttgtacgggttcgggtctttcggg 317  Q
    ||| ||||||||||||||||||||    
19867000 ttgcacgggttcgggtctttcggg 19866977  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 317
Target Start/End: Complemental strand, 19872001 - 19871878
Alignment:
194 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggt 293  Q
    |||||||||||| |||||||||||||| |  ||   || ||||| | ||||||||||||||||||||   ||||||||   |    ||||||||||||||    
19872001 taggggtggacaacgggcgggttcgggtctgaaagctcgacccagctcaacccgcggtttgtgtgtacagacccatttaagctagcttttcttcttcggt 19871902  T
294 ttgtacgggttcgggtctttcggg 317  Q
    ||| ||||||||||||||||||||    
19871901 ttgcacgggttcgggtctttcggg 19871878  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 317
Target Start/End: Complemental strand, 19876902 - 19876779
Alignment:
194 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggt 293  Q
    |||||||||||| |||||||||||||| |  ||   || ||||| | ||||||||||||||||||||   ||||||||   |    ||||||||||||||    
19876902 taggggtggacaacgggcgggttcgggtctgaaagctcgacccagctcaacccgcggtttgtgtgtacagacccatttaagctagcttttcttcttcggt 19876803  T
294 ttgtacgggttcgggtctttcggg 317  Q
    ||| ||||||||||||||||||||    
19876802 ttgcacgggttcgggtctttcggg 19876779  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 317
Target Start/End: Complemental strand, 36585783 - 36585660
Alignment:
194 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtttgtgtgtagcaacccatttctacccatttttcttcttcggt 293  Q
    |||||||||||| |||||||||||||| |  ||   || ||||| | ||||||||||||||||||||   ||||||||   |    ||||||||||||||    
36585783 taggggtggacaacgggcgggttcgggtctgaaagctcgacccagctcaacccgcggtttgtgtgtacagacccatttaagctagcttttcttcttcggt 36585684  T
294 ttgtacgggttcgggtctttcggg 317  Q
    ||| ||||||||||||||||||||    
36585683 ttgcacgggttcgggtctttcggg 36585660  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 19862445 - 19862408
Alignment:
280 ttttcttcttcggtttgtacgggttcgggtctttcggg 317  Q
    ||||||||||||||||| ||||||||||||||||||||    
19862445 ttttcttcttcggtttgcacgggttcgggtctttcggg 19862408  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 14083994 - 14084029
Alignment:
193 ttaggggtggacatcgggcgggttcgggcccaaacc 228  Q
    ||||||||||||||||||||||||||||||||||||    
14083994 ttaggggtggacatcgggcgggttcgggcccaaacc 14084029  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 5323092 - 5323124
Alignment:
193 ttaggggtggacatcgggcgggttcgggcccaa 225  Q
    |||||||||| ||||||||||||||||||||||    
5323092 ttaggggtgggcatcgggcgggttcgggcccaa 5323124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 39289023 - 39289067
Alignment:
206 tcgggcgggttcgggcccaaaccttcaacccatcccaacccgcgg 250  Q
    ||||||||||||||||||||||| || ||||| || |||||||||    
39289023 tcgggcgggttcgggcccaaaccctccacccagccgaacccgcgg 39289067  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 39384313 - 39384269
Alignment:
206 tcgggcgggttcgggcccaaaccttcaacccatcccaacccgcgg 250  Q
    ||||||||||||||||||||||| || ||||| || |||||||||    
39384313 tcgggcgggttcgggcccaaaccctccacccagccgaacccgcgg 39384269  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 221
Target Start/End: Complemental strand, 39384336 - 39384308
Alignment:
193 ttaggggtggacatcgggcgggttcgggc 221  Q
    |||||||||||||||||||||||||||||    
39384336 ttaggggtggacatcgggcgggttcgggc 39384308  T

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Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 102265 - 102323
Alignment:
194 taggggtggacatcgggcgggttcgggcccaaaccttcaacccatcccaacccgcggtt 252  Q
    ||||||||||||||||||||||||||| ||||| |  | ||||| ||||||||||||||    
102265 taggggtggacatcgggcgggttcgggtccaaagcacccacccagcccaacccgcggtt 102323  T

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