View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2945_low_4 (Length: 282)
Name: NF2945_low_4
Description: NF2945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2945_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 6 - 238
Target Start/End: Original strand, 25450628 - 25450860
Alignment:
| Q |
6 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttgccttattcatgt |
105 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25450628 |
gacatcatcatcactgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttaccttattcatgt |
25450727 |
T |
|
| Q |
106 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25450728 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
25450827 |
T |
|
| Q |
206 |
acagccgtgtgtaaaatacagcagaaatatatt |
238 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
25450828 |
acagccgtgtgtaaaatatagcagaaatatatt |
25450860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 6 - 238
Target Start/End: Original strand, 25446065 - 25446297
Alignment:
| Q |
6 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttgccttattcatgt |
105 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
25446065 |
gacatcatcatcactgttgacttcccttaattcatgcataactattattgtttaggatcaattgtcattagtcagtacaattgacttaccttattcatgt |
25446164 |
T |
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| Q |
106 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
205 |
Q |
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| T |
25446165 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
25446264 |
T |
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| Q |
206 |
acagccgtgtgtaaaatacagcagaaatatatt |
238 |
Q |
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||| |||||||||||||| |||||||||||||| |
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| T |
25446265 |
acaaccgtgtgtaaaatatagcagaaatatatt |
25446297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 2607085 - 2606851
Alignment:
| Q |
6 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttgccttattcatgt |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||| |
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| T |
2607085 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaattgtcattagttagtacaattgacttaccttattcatgt |
2606986 |
T |
|
| Q |
106 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
205 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2606985 |
acaattgttttgctctactgtaattccaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacatctataaagccttgt |
2606886 |
T |
|
| Q |
206 |
acagccgtgtgtaaa--atacagcagaaatatatt |
238 |
Q |
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|||||| |||||||| ||| |||||||||||||| |
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| T |
2606885 |
acagccatgtgtaaaatatatagcagaaatatatt |
2606851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 221
Target Start/End: Original strand, 31901369 - 31901584
Alignment:
| Q |
6 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttgccttattcatgt |
105 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |||||||||||| |
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| T |
31901369 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttatgatcaactgtcattagtcagtaaagttgacttaccttattcatgt |
31901468 |
T |
|
| Q |
106 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
205 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31901469 |
acaattgttttgctctactgtaattcccattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
31901568 |
T |
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| Q |
206 |
acagccgtgtgtaaaa |
221 |
Q |
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|||||||||||||||| |
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| T |
31901569 |
acagccgtgtgtaaaa |
31901584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 31925239 - 31925450
Alignment:
| Q |
9 |
atcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttgccttattcatgtaca |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
31925239 |
atcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacagttgacttaccttattcatgtaca |
31925338 |
T |
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| Q |
109 |
attgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgtaca |
208 |
Q |
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||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31925339 |
attgttttgctctactgtaattccaa-tcaataaatttaattattatgtaaatgcatttgattaccttgtaaagcttggacaactataaagccttgtaca |
31925437 |
T |
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| Q |
209 |
gccgtgtgtaaaa |
221 |
Q |
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|||||||||||| |
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| T |
31925438 |
accgtgtgtaaaa |
31925450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 38489764 - 38489714
Alignment:
| Q |
232 |
atatattgagttttaattgattgcttgaaacttgaatgaaatccaggttct |
282 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38489764 |
atattttgagttttaattgattgcttgaaacttgaatgaaatctaggttct |
38489714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 48446691 - 48446735
Alignment:
| Q |
232 |
atatattgagttttaattgattgcttgaaacttgaatgaaatcca |
276 |
Q |
| |
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|||| |||||||||||||||||||||||||| |||| |||||||| |
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| T |
48446691 |
atattttgagttttaattgattgcttgaaacatgaaagaaatcca |
48446735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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