View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2947R-Insertion-1 (Length: 1060)
Name: NF2947R-Insertion-1
Description: NF2947R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2947R-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 326 - 997
Target Start/End: Complemental strand, 25276422 - 25275769
Alignment:
| Q |
326 |
tgttgaacttaagataccgatacattaacatttctagtaatttaaatatacctgtcaaacattgacacgtgaggtgtgggatattggaaaaacctttgat |
425 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25276422 |
tgttgaacataagatactgatacattaacatttctagtaatttaaatatacctgtcaaacactgacacgtgaggtgtgggatattggaaaaacctttgat |
25276323 |
T |
|
| Q |
426 |
atgaagtgtcagttctatattcttttcgaaattacgggagccattggcactccgcttattattgacgccgcaactcagaaacgcacatttggccattacg |
525 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25276322 |
atgaagtgtcagttctatattcttttcgaaattacgggagccattggcacccggcttattattgacgccgaaactcagaaacgcacatttggccattaca |
25276223 |
T |
|
| Q |
526 |
cacaggtgctggtggatattgatatttcaaggcgtctcatctacggattcatggtggaaagggaaggttttgcttttcctgtcgaggttgattatgagtg |
625 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| |
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| T |
25276222 |
cgcaggtgctggtggatattgatatttcaaggcgtctcatctacgaagtcatggtggaaagggaaggtt----------------ggttgattatgagtg |
25276139 |
T |
|
| Q |
626 |
gctcccggatttctgttcacactgcaaaaatccccttggtattgattcctcgctcgctttttagaagtcatggttaactctgaaattacggcaacagttg |
725 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25276138 |
gctcccggatttctgttcacactgcaaaaatccccttggtattgattcctcgctcgctttttacaagtcatggttaactctgaaattacggcaacagttg |
25276039 |
T |
|
| Q |
726 |
cagcttaacattctgatgcgccgactcatgatgttactgccgatacttttagctttgcattgcaaaatgtttcagacgcaattcaacagggtttgtttcc |
825 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25276038 |
cagcttaacattctgatgcgcctactcatgatgttactgccaatacttttagctttgcattgcaaaatgtttcagacgcaattcaacagggtttgtttcc |
25275939 |
T |
|
| Q |
826 |
tcaacctgcctctcccgtgttgggaattagctactgtagtggctcataatgacgtgcattcactttggagtcgagcaaacacatccagatgatcagaaca |
925 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25275938 |
tcaacctgcctctcccgtgtt-ggaattagctactgtagtggctcataatgacgtgcattcac-ttggagtcgagcaaacacatccagatgatcagaaca |
25275841 |
T |
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| Q |
926 |
tgagcgttcccacttctccagctgctactc-ggtt-catcttattatagagcatggtggacgtgcatgaggata |
997 |
Q |
| |
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|||||||||| ||||||||||||||||||| |||| |||| ||||||||||||| || |||||||||||||||| |
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| T |
25275840 |
tgagcgttcctacttctccagctgctactctggttccatc-tattatagagcat-gttgacgtgcatgaggata |
25275769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 142 - 315
Target Start/End: Complemental strand, 25276704 - 25276531
Alignment:
| Q |
142 |
gccttctggccactactcactactgagttggcaacttggaaaaacaaagtaaatgccaacataagacaatggttctccaattgcactcgtacgaagcttt |
241 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25276704 |
gccttctggctactactcactactgagttggcaacttggaaaaacaaagtaaatgccaacataagacaatggttctccaattgcactcgtacgaagcttt |
25276605 |
T |
|
| Q |
242 |
tactccatcaagtcacacatcacaaatacccatatagagaaaaacagataagtgcgtcacatatccatgtaatg |
315 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
25276604 |
tactccatcaagtcacacatcacaaatacccttatagagaaaaacagttaagtgtgtcacatatccatgtaatg |
25276531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 649 - 951
Target Start/End: Complemental strand, 5570497 - 5570201
Alignment:
| Q |
649 |
gcaaaaatccccttggtattgattcctcgctcgctttttagaagtca-tggttaactctgaaattacggcaacagttgcagcttaacattctgatgcgcc |
747 |
Q |
| |
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|||||||||||||||| | || |||||| |||||||| |||||||| |||||||||||||||||||||||||||| ||| ||| ||||||||||||||| |
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| T |
5570497 |
gcaaaaatccccttggcaatggttcctcattcgcttttgagaagtcaatggttaactctgaaattacggcaacagtcgcaacttcacattctgatgcgcc |
5570398 |
T |
|
| Q |
748 |
gactcatgatgttactgccgatacttttagctttgcattgcaaaatgtttcagacgcaattcaacagggtttgtttcctcaacctgcctctcccgtgttg |
847 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| |||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5570397 |
tactcatgatgttattgccaatacttttagctt-----tgcaaaatatttcggacgcaattcaacagggtttgttgcctcaacctgcctctcccgtgtt- |
5570304 |
T |
|
| Q |
848 |
ggaattagctactgtagtggctcataatgacgtgcattcactttggagtcgagcaaacacatccagatgatcagaacatgagcgttcccacttctccagc |
947 |
Q |
| |
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||||||| |||||||||| || || ||||||||||||||| || ||||||||||||||||||| |||||||| ||||||| ||||| ||||||||||| |
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| T |
5570303 |
ggaattatctactgtagttgcgcacgatgacgtgcattcac-ttagagtcgagcaaacacatccggatgatcaagacatgagtgttcctacttctccagc |
5570205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 6e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 36726601 - 36726478
Alignment:
| Q |
9 |
aaactcacatcaatggtcgaatttatggctggaagtagattcaaaattggtgatcaaagccttcaaaaatgtttctttagttccttggaagcttagaaac |
108 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36726601 |
aaactcacatcagcggtcgaaattatggctggaagcagattcagaattggtgatcaaagccttaaaaaatgtttctttagttccttggaagcttagaaac |
36726502 |
T |
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| Q |
109 |
agatggttaaactgcgttcaattg |
132 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
36726501 |
agatggttaaactgcgttcaattg |
36726478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 469 - 541
Target Start/End: Original strand, 17705181 - 17705253
Alignment:
| Q |
469 |
ttggcactccgcttattattgacgccgcaactcagaaacgcacatttggccattacgcacaggtgctggtgga |
541 |
Q |
| |
|
|||| ||||| || || ||||| |||||||||||||||||||| ||||||||||| || | |||||||||||| |
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|
| T |
17705181 |
ttggtactcctctcatcattgatgccgcaactcagaaacgcacctttggccattatgcgcgggtgctggtgga |
17705253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 468 - 544
Target Start/End: Complemental strand, 23869413 - 23869337
Alignment:
| Q |
468 |
attggcactccgcttattattgacgccgcaactcagaaacgcacatttggccattacgcacaggtgctggtggatat |
544 |
Q |
| |
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||||||||||| || || ||||| |||||||||||||||||| ||||||||||| | | ||||||||||||||| |
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| T |
23869413 |
attggcactcctctcatcattgatatcgcaactcagaaacgcacctttggccattatgtgcgggtgctggtggatat |
23869337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 483 - 544
Target Start/End: Original strand, 17111295 - 17111357
Alignment:
| Q |
483 |
attattgacgccgcaactcagaaacgcac-atttggccattacgcacaggtgctggtggatat |
544 |
Q |
| |
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|||||||||||||||||||| ||||| || ||||| |||||||| | ||||||||||||||| |
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| T |
17111295 |
attattgacgccgcaactcaaaaacgtactttttggtcattacgcgcgggtgctggtggatat |
17111357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 579 - 646
Target Start/End: Complemental strand, 32136282 - 32136215
Alignment:
| Q |
579 |
gtggaaagggaaggttttgcttttcctgtcgaggttgattatgagtggctcccggatttctgttcaca |
646 |
Q |
| |
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|||||||||||||| | |||||| |||||||| | ||||||||||||||||||||| |||||||| |
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| T |
32136282 |
gtggaaagggaaggatacgcttttaacgtcgaggtagcttatgagtggctcccggatttttgttcaca |
32136215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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