View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2947R-Insertion-11 (Length: 473)
Name: NF2947R-Insertion-11
Description: NF2947R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2947R-Insertion-11 |
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| [»] chr1 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 9 - 473
Target Start/End: Original strand, 50275443 - 50275911
Alignment:
| Q |
9 |
gaaagtgtctctgaaagagattgttgcaaagcttccatgccttgagataatgcatcttcagcctgttgacaagaatgctgcagattgaagatcgccatca |
108 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275443 |
gaaagtgtctctgaaagagattgttgcaaaccttccattccttgagataatgcatcttcagcctgttgacaagaatgctgcagattgaagatcgccatca |
50275542 |
T |
|
| Q |
109 |
attgctgatccgttaacgcctcgaggtggtttctaattatctgaatctcaagaggaaaaaacaaatgcaaagaaagaagtaagagttaacaaaatgtata |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
50275543 |
attgctgatccgttaacgcctcgaggtggtttctaattatctgaatctcaagaggaaaatacaaatgcaaagaaagaagtaagagttaacaaaatgtata |
50275642 |
T |
|
| Q |
209 |
tatttgttagttaattactagtggtagtttgtttttagcctct----ataaagtcttgatgtaaccgcttattcattctaaatatcatttctattttact |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
50275643 |
tatttgttagttaattactagtggtagtttgtttttagcctctataaataaagtcttgatgtaatcgcttattcattctaaatatcatttctattttact |
50275742 |
T |
|
| Q |
305 |
atctaaacttttctcttatccacggcttccatcaagaattgtaataatattttcgaacaaaatcaccttgagaagttcggatgaacggaatccaccaagc |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275743 |
atctaaacttttctcttatccacggcttccatcaagaattgtaataatattttcaaacaaaatcaccttgagaagttcggatgaacggaatccaccaagc |
50275842 |
T |
|
| Q |
405 |
cacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgca |
473 |
Q |
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| T |
50275843 |
cacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgca |
50275911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 9 - 473
Target Start/End: Original strand, 50279467 - 50279935
Alignment:
| Q |
9 |
gaaagtgtctctgaaagagattgttgcaaagcttccatgccttgagataatgcatcttcagcctgttgacaagaatgctgcagattgaagatcgccatca |
108 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279467 |
gaaagtgtctctgaaagagattgttgcaaaccttccattccttgagataatgcatcttcagcctgttgacaagaatgctgcagattgaagatcgccatca |
50279566 |
T |
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| Q |
109 |
attgctgatccgttaacgcctcgaggtggtttctaattatctgaatctcaagaggaaaaaacaaatgcaaagaaagaagtaagagttaacaaaatgtata |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
50279567 |
attgctgatccgttaacgcctcgaggtggtttctaattatctgaatctcaagaggaaaatacaaatgcaaagaaagaagtaagagttaacaaaatgtata |
50279666 |
T |
|
| Q |
209 |
tatttgttagttaattactagtggtagtttgtttttagcctct----ataaagtcttgatgtaaccgcttattcattctaaatatcatttctattttact |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
50279667 |
tatttgttagttaattactagtggtagtttgtttttagcctctataaataaagtcttgatgtaatcgcttattcattctaaatatcatttctattttact |
50279766 |
T |
|
| Q |
305 |
atctaaacttttctcttatccacggcttccatcaagaattgtaataatattttcgaacaaaatcaccttgagaagttcggatgaacggaatccaccaagc |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279767 |
atctaaacttttctcttatccacggcttccatcaagaattgtaataatattttcaaacaaaatcaccttgagaagttcggatgaacggaatccaccaagc |
50279866 |
T |
|
| Q |
405 |
cacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgca |
473 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279867 |
cacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgca |
50279935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 14462668 - 14462572
Alignment:
| Q |
377 |
aagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgca |
473 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14462668 |
aagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgca |
14462572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 367 - 472
Target Start/End: Complemental strand, 22610283 - 22610178
Alignment:
| Q |
367 |
tcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagc |
466 |
Q |
| |
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|||||||||||| ||| |||||||| ||| ||||| |||| || ||| |||||||| | |||||||||||||||||| | || |||||||||||||||| |
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| T |
22610283 |
tcaccttgagaatttcagatgaacgaaatgcaccatgccaaataaaaaatctttctactggtgtcttccacaacccatagagcatgtgaaatacatcagt |
22610184 |
T |
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| Q |
467 |
ctttgc |
472 |
Q |
| |
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|||||| |
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| T |
22610183 |
ctttgc |
22610178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 22610688 - 22610624
Alignment:
| Q |
9 |
gaaagtgtctctgaaagagattgttgcaaagcttccatgccttgagataatgcatcttcagcctg |
73 |
Q |
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|||||||| ||| |||||||||||| ||| ||||||||||| |||||||| ||||| |||||||| |
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| T |
22610688 |
gaaagtgtttctaaaagagattgtttcaatgcttccatgccgtgagataaagcatcctcagcctg |
22610624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 438
Target Start/End: Complemental strand, 14931491 - 14931420
Alignment:
| Q |
367 |
tcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccaca |
438 |
Q |
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|||||||||||||||| || || || || ||||||||||| | |||||| ||||| |||||||| ||||||| |
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| T |
14931491 |
tcaccttgagaagttcagacgaccgaaaaccaccaagccataagaaacacctttcagcaggtgttttccaca |
14931420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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