View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2947R-Insertion-12 (Length: 456)
Name: NF2947R-Insertion-12
Description: NF2947R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2947R-Insertion-12 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 224 - 427
Target Start/End: Complemental strand, 44783369 - 44783167
Alignment:
| Q |
224 |
ctgatgaagcaatatctatcaatattatagtaaattttttgcaagtgtaaactgatacgagaatcttgttaaaaagtaatatcttgttttgtttgggtat |
323 |
Q |
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| T |
44783369 |
ctgatgaagcaatatctatcaatattatagtaaattttttgcaagtgtaaactgatacgagaatcttgttaaaaagtaatatcttgttttgtttgggtat |
44783270 |
T |
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| Q |
324 |
caaatttatgaagaaataagctattttagcttaactatttatatttatcttaaagtctctaacctatgttgaactgacaattgatgtttactttgttttt |
423 |
Q |
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| T |
44783269 |
caaatttatgaagaaataagctattttagcttaactatttatatttatcttaaagtctctaa-ctatgttgaactgacaattgatgtttactttgttttt |
44783171 |
T |
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| Q |
424 |
ggga |
427 |
Q |
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|||| |
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| T |
44783170 |
ggga |
44783167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 44783810 - 44783685
Alignment:
| Q |
92 |
cataacattttccccatattttcaatgagttttattaagagtacaaattgttcatgaaacaactacatcttgt--tcatgaaatgaatcgtaaaactgaa |
189 |
Q |
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| T |
44783810 |
cataacattttccccatattttcaacgagttttattaagagtacaaattattcatgaaacaactacatcttattatcatgaaatgaatcgtaaaactgaa |
44783711 |
T |
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| Q |
190 |
aagaaagcaattaaaaaatttaccaa |
215 |
Q |
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| T |
44783710 |
aagaaagcaattaaaatttttaccaa |
44783685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 44783893 - 44783831
Alignment:
| Q |
26 |
gtatgttcaaaattaaaaatcnnnnnnnngatttgtgcggttttaatatttgacatgtcgact |
88 |
Q |
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| T |
44783893 |
gtatgttcaaaattaaaaatctttttttttatttgtgcggttttaatatttaacatgtcgact |
44783831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 9912415 - 9912354
Alignment:
| Q |
102 |
tccccatattttcaatgagttttattaagagtacaaa-ttgttcatgaaacaactacatctt |
162 |
Q |
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| T |
9912415 |
tccccacattttcaatgagttttatttagagtacaaacttattcatgaaacaactacatctt |
9912354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 195
Target Start/End: Original strand, 15415872 - 15415961
Alignment:
| Q |
109 |
attttcaatgagttttattaagagtacaaattg-ttcatgaaacaactacatcttgt--tcatgaaatgaatcgtaaaactgaaaagaaa |
195 |
Q |
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||||||| |||||||||| |||||||||||| ||||||||||||||||||||| | || ||||||||| || |||||||||||||| |
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| T |
15415872 |
attttcattgagttttatctagagtacaaatttattcatgaaacaactacatcttattatcctgaaatgaacagtgaaactgaaaagaaa |
15415961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 30616757 - 30616696
Alignment:
| Q |
102 |
tccccatattttcaatgagttttattaagagta-caaattgttcatgaaacaactacatctt |
162 |
Q |
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|||||| |||| ||||||||||||| ||||||| ||||| ||||||||||||||| ||||| |
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| T |
30616757 |
tccccacatttacaatgagttttataaagagtatgaaattattcatgaaacaactatatctt |
30616696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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