View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2947R-Insertion-13 (Length: 430)
Name: NF2947R-Insertion-13
Description: NF2947R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2947R-Insertion-13 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 66 - 430
Target Start/End: Original strand, 34130355 - 34130742
Alignment:
| Q |
66 |
gctgaaaaccattaacatcattactattatattttctaattataa-tcatttctttggtccctgcagatggctttattataaactgagcagaaagttgaa |
164 |
Q |
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| T |
34130355 |
gctgaaacccattaacatcattactgttatattttctaattataactcatttctttggtccctgcagatggctttattataaactgagcagaaagttgaa |
34130454 |
T |
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| Q |
165 |
gaggatgaggagcctgaaactactgccaataaaagagacagaagaaaattagaaattgacaattttatttacttcaaggctagggtgccacaaagaatga |
264 |
Q |
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| T |
34130455 |
gaggatgaggagcctgaaactactgccaataaaagagacagaagaaaattagaaattgacaattttatttacttcaaggctagggtgccacaaagaatga |
34130554 |
T |
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| Q |
265 |
tgtaatat----------------------tcattatttggagaggtggtgttaagaactttatgcacacattttgcataaatgatcaccttgtaaatta |
342 |
Q |
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| T |
34130555 |
tgtaatattcaattttggtttaatgtgatgtcattatttggagaggtggtgttaagaactttatgcacacattttgcataaatgatcaccttgtaaatta |
34130654 |
T |
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| Q |
343 |
tataatcaatgcaaatatgcttgtgcacaaaaatcagttgcaccattgacttgtttgttctacatgtttagtgtatatagtatttgcc |
430 |
Q |
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| T |
34130655 |
tataatcaatgcaaatatgcttgcgcacaaaaatcagttgcaccattgacttgtttgttctacatgtttagtgtatatagtatttgcc |
34130742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 64
Target Start/End: Original strand, 34129778 - 34129813
Alignment:
| Q |
29 |
aatattttggagtgagggttttcctagaagaggttc |
64 |
Q |
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| T |
34129778 |
aatattttggagtgagggttttcctagaggaggttc |
34129813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 48559469 - 48559585
Alignment:
| Q |
114 |
tttctttggtccctgcagatggctttattataaactgagcagaaagttgaagaggatgaggagcctgaaactactgccaataaaagagac-agaagaaaa |
212 |
Q |
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| T |
48559469 |
tttcttttgtcactgcagctggctttattagaagctgagcagaaagctgaagaggctgaggggcctgaaactagtatgaagaaaagaggcaagaagaaaa |
48559568 |
T |
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| Q |
213 |
ttagaaattgacaattt |
229 |
Q |
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| T |
48559569 |
ctagaaattgataattt |
48559585 |
T |
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