View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2947R-Insertion-15 (Length: 238)

Name: NF2947R-Insertion-15
Description: NF2947R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2947R-Insertion-15
NF2947R-Insertion-15
[»] chr7 (2 HSPs)
chr7 (8-238)||(40749269-40749499)
chr7 (9-160)||(44150818-44150969)
[»] chr1 (8 HSPs)
chr1 (8-148)||(31644075-31644215)
chr1 (9-160)||(28496124-28496275)
chr1 (31-160)||(12774894-12775023)
chr1 (9-160)||(12804529-12804680)
chr1 (9-124)||(50788837-50788952)
chr1 (9-129)||(36989328-36989448)
chr1 (9-115)||(42287119-42287225)
chr1 (9-115)||(4160379-4160485)
[»] chr4 (2 HSPs)
chr4 (9-148)||(22085524-22085663)
chr4 (9-129)||(30518166-30518286)
[»] chr8 (2 HSPs)
chr8 (9-129)||(33186723-33186843)
chr8 (9-148)||(5788741-5788880)
[»] chr2 (3 HSPs)
chr2 (51-133)||(40040773-40040855)
chr2 (9-145)||(38895875-38896011)
chr2 (24-115)||(42898300-42898391)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 40749499 - 40749269
Alignment:
Q  8 accacaatcacacttatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccat 107  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40749499 accacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttggaacacttatcacacttccat 40749400  T
Q  108 ttcttctcgccatgttttctactaaaatgtttctttattccggtgaggtcacccaaggccctagccgcgtcgtggtggacacaagtattctccgggcaga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40749399 ttcttctcgccatgttttctactaaaatgtttctttattccggtgaggtcacccaaggccctagccgcgtcgtggtggacacaagtattctccgggcaga 40749300  T
Q  208 tgtatacctttttccttggttctttgttgga 238  Q
    |||||||||||||||||||||||||||||||    
T  40749299 tgtatacctttttccttggttctttgttgga 40749269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 44150818 - 44150969
Alignment:
Q  9 ccacaatcacacttatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatt 108  Q
    ||||||||||| || ||||| ||||||||||| |||||   |||||| |||||||| |||||||| |||||| | || || ||||| ||||| |||||||    
T  44150818 ccacaatcacatttgtattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagcacttgtcacatttccatt 44150917  T
Q  109 tcttctcgccatgttttctactaaaatgtttctttattccggtgaggtcacc 160  Q
    ||||||| |||||||| |  ||||||||||| || ||||| || ||||||||    
T  44150918 tcttctcaccatgtttgcggctaaaatgttttttgattccagtaaggtcacc 44150969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 31644075 - 31644215
Alignment:
Q  8 accacaatcacacttatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccat 107  Q
    |||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||| ||||| |||||  |||| || ||||||||||| ||||||    
T  31644075 accacaatcacatttatattctcgagtaccacaggttttagagtgagctttccaatcagaatgaacagcatagatctttgagcacttatcacatttccat 31644174  T
Q  108 ttcttctcgccatgttttctactaaaatgtttctttattcc 148  Q
    || ||||| ||||||||||||||| |||||||||| |||||    
T  31644175 tttttctcaccatgttttctactataatgtttcttaattcc 31644215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 28496124 - 28496275
Alignment:
Q  9 ccacaatcacacttatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatt 108  Q
    ||||| ||||| || |||||||| |||||||| ||||| || |||||||||||||||||||| ||||||||||| |||||||| || ||||| ||||| |    
T  28496124 ccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaacatttttcacatttccact 28496223  T
Q  109 tcttctcgccatgttttctactaaaatgtttctttattccggtgaggtcacc 160  Q
    ||||||| || || ||||||||||| || || ||||| || |||||||||||    
T  28496224 tcttctcaccgtgctttctactaaagtgcttttttatacctgtgaggtcacc 28496275  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 160
Target Start/End: Complemental strand, 12775023 - 12774894
Alignment:
Q  31 tagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatgttttctact 130  Q
    |||||||||| |||||||  ||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||| ||||| ||||| ||||||      
T  12775023 tagtaccacaagttttagaatgagctttccaatcagattgaacagcatacttcttagaacacttttcacacttccattttttctcaccatgctttctaaa 12774924  T
Q  131 aaaatgtttctttattccggtgaggtcacc 160  Q
    | | |||||||| ||||| |||||||||||    
T  12774923 atagtgtttcttaattccagtgaggtcacc 12774894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 12804529 - 12804680
Alignment:
Q  9 ccacaatcacacttatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatt 108  Q
    ||||| |||||  |||| || ||||||||||| || ||||  ||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||| |    
T  12804529 ccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaacacttttcacatttccact 12804628  T
Q  109 tcttctcgccatgttttctactaaaatgtttctttattccggtgaggtcacc 160  Q
    | ||||| ||||| ||||||  ||| || ||||| ||||| |||||||||||    
T  12804629 ttttctcaccatgctttctagaaaagtgcttcttaattccagtgaggtcacc 12804680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 50788837 - 50788952
Alignment:
Q  9 ccacaatcacacttatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatt 108  Q
    ||||| |||||| |||||||||| || ||||| || ||||  || || ||||||||||||||||| ||||| ||||| || |||||||||||||||||||    
T  50788837 ccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttagagcacttatcacacttccatt 50788936  T
Q  109 tcttctcgccatgttt 124  Q
    ||||||| ||||||||    
T  50788937 tcttctcaccatgttt 50788952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 36989448 - 36989328
Alignment:
Q  9 ccacaatcacacttatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatt 108  Q
    ||||| ||||| || ||||| || ||||||||  |||| |  ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |    
T  36989448 ccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaacacttatcacatttccact 36989349  T
Q  109 tcttctcgccatgttttctac 129  Q
    | ||||| ||||| |||||||    
T  36989348 ttttctcaccatgctttctac 36989328  T

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Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 42287225 - 42287119
Alignment:
Q  9 ccacaatcacacttatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatt 108  Q
    |||||||||||  ||||||||||||||||||| || ||||  || |||||||| ||||||||||| ||||||||||| || || || ||||| ||||| |    
T  42287225 ccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatatttctttgagcatttttcacatttccact 42287126  T
Q  109 tcttctc 115  Q
    |||||||    
T  42287125 tcttctc 42287119  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 4160485 - 4160379
Alignment:
Q  9 ccacaatcacacttatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatt 108  Q
    ||||| ||||||||||| ||| |||| |||||  |||| |  |||||||||||||| || ||||||||||||   || ||||| || ||||||||||| |    
T  4160485 ccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaacatttctcacacttccact 4160386  T
Q  109 tcttctc 115  Q
    |||||||    
T  4160385 tcttctc 4160379  T

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Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 22085524 - 22085663
Alignment:
Q  9 ccacaatcacacttatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatt 108  Q
    ||||||||||| || || |||||||| |||||  | ||  | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  22085524 ccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttccact 22085623  T
Q  109 tcttctcgccatgttttctactaaaatgtttctttattcc 148  Q
    ||||||| ||||||||||||||| ||||||||||||||||    
T  22085624 tcttctcaccatgttttctactataatgtttctttattcc 22085663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 30518166 - 30518286
Alignment:
Q  9 ccacaatcacacttatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatt 108  Q
    ||||| ||||| || ||||||||||||||||| ||||| | ||||||||||||||| || ||||| |||||    || || ||||| ||||||||||| |    
T  30518166 ccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagcacttctcacacttccact 30518265  T
Q  109 tcttctcgccatgttttctac 129  Q
    |||| || ||||| |||||||    
T  30518266 tcttttcaccatgctttctac 30518286  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 33186843 - 33186723
Alignment:
Q  9 ccacaatcacacttatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatt 108  Q
    ||||||||||| ||||| ||||||| ||||||   ||||| |||||||||||||||||||||||| ||||||||||| ||||| || ||||| ||||| |    
T  33186843 ccacaatcacatttatactctctagaaccacaaactttagagtgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttccact 33186744  T
Q  109 tcttctcgccatgttttctac 129  Q
    | ||||| |||||||||||||    
T  33186743 ttttctcaccatgttttctac 33186723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 5788741 - 5788880
Alignment:
Q  9 ccacaatcacacttatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatt 108  Q
    ||||| |||||  ||||||||||||| ||||| ||||| |  ||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||| |    
T  5788741 ccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaacacttttcacatttccact 5788840  T
Q  109 tcttctcgccatgttttctactaaaatgtttctttattcc 148  Q
    ||||||| ||||| |||||   ||| |||||||| |||||    
T  5788841 tcttctcaccatgctttctggaaaagtgtttcttgattcc 5788880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 40040855 - 40040773
Alignment:
Q  51 tgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctcgccatgttttctactaaa 133  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || || |||||||||||    
T  40040855 tgagccttccaatcagattgaactgcatatttcttagaacacttatcacacttccacttcttctcaccgtgctttctactaaa 40040773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 38895875 - 38896011
Alignment:
Q  9 ccacaatcacacttatattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatt 108  Q
    ||||||||||| || ||||||||||||||||| || || | ||| ||||||||||| |||||||| |||||    || || ||||| ||||||||||| |    
T  38895875 ccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagcacttctcacacttccact 38895974  T
Q  109 tcttctcgccatgttttctactaaaatgtttctttat 145  Q
    ||||||| || ||||| |||| ||| || ||||||||    
T  38895975 tcttctcaccgtgtttcctacaaaagtgcttctttat 38896011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 42898391 - 42898300
Alignment:
Q  24 tattctctagtaccacaggttttagtgtgagctttccaatcagattgaactgcatatttcttggaacacttatcacacttccatttcttctc 115  Q
    |||||||| || ||||||||||| | |||||||||||| || |||||||||||||| ||||| || ||||| ||||| ||||| ||||||||    
T  42898391 tattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcacttgtcacatttccacttcttctc 42898300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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