View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2947R-Insertion-2 (Length: 1020)
Name: NF2947R-Insertion-2
Description: NF2947R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2947R-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 893; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 893; E-Value: 0
Query Start/End: Original strand, 9 - 950
Target Start/End: Original strand, 10337654 - 10338597
Alignment:
| Q |
9 |
atacaaagtgaaagtaaaccaaaaagagaagactatactgaatggaatcacaggtgcggtgtgtccaggagaaatactagctatgttagggccatcaggc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10337654 |
atacaaagtgaaagtaaaccaaaaagagaagactatactgaatggaatcacaggtgtggtgtgtccaggagaaatactagctatgttagggccatcaggc |
10337753 |
T |
|
| Q |
109 |
agtggcaaaacaacactcctaacagcactcggaggccgtctcaacggcaaactaaccggaaaaaccacttacaacaatcaacctttctcgggttcaataa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10337754 |
agtggcaaaacaacactcctaacagcactcggaggccgtctcaacggcaaactaaccggaaaaaccacttacaacaatcaacctttctcgggttcaataa |
10337853 |
T |
|
| Q |
209 |
aaagaagaacaggttttgtagctcaagatgatgttctttaccctcacttaaccgttaccgaaacactagtgttcactgcacctttgaggcttcctaaaac |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10337854 |
aaagaagaacaggttttgtagctcaagatgatgttctttaccctcacttaaccgttaccgaaacactagtgttcactgcacttttgaggcttcctaaaac |
10337953 |
T |
|
| Q |
309 |
cttaacaagagatgaaaaagttgtgcatgtagagagagtgatttctgagttaggactaaataattgtaggaatagtatgattggaggaccacttttgaga |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10337954 |
cttaacaagagatgaaaaagttgtgcatgtagagagagtgatttctgagttaggactaaataattgtaggaatagtatgattggaggaccacttttgaga |
10338053 |
T |
|
| Q |
409 |
ggtatatcaggtggtgagaaaaggagagtgagtataggacaagaaatgcttataaatccaagccttttgttgcttgatgaacctacttctggtttggatt |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10338054 |
ggtatatcaggtggtgagaaaaggagagtgagtataggacaagaaatgcttataaatccaagccttttgttgcttgatgaacctacttctggtttggatt |
10338153 |
T |
|
| Q |
509 |
ctaccactgctttgagaatcttaaacactatcaaaaaacttgctagtggtggtagaactgttgttacaaccattcatcaaccttcaagtagactctgcta |
608 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10338154 |
ctaccactgctttgagaatcttaaacactatcaaaaaacttgctagtggtggtagaactgttgttacaaccattcatcaaccttcaagtagactctacta |
10338253 |
T |
|
| Q |
609 |
tatgtttgataaggttgtgttgctatctgaagggtgtcctatctattatggtcctgcttcaactgctcttgaatattttctcatctgttggtttttccac |
708 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10338254 |
tatgtttgataaggttgtgttgctatctgaagggtgtcctatctattatggtcctgcttcaactgctcttgaata-tttctcatctgttggtttttccac |
10338352 |
T |
|
| Q |
709 |
ttccgtgactgttaatccagctgatcttttgcttgatcttgccaatggtaataatcaataaccattattttattcttcgttattaactaaagtgacacta |
808 |
Q |
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| T |
10338353 |
ttccgtgactgttaatccagctgatcttttgcttgatcttgccaatggtaataatcaataaccattattttattcttcgttattaactaaagtgacacta |
10338452 |
T |
|
| Q |
809 |
atagccattttacgactatctccgaggggatttgaactttgtccctcgagattac-atgtcagactcttactactg-actgacacgtcacggactttcaa |
906 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10338453 |
atagccattttacgactatctccgaggggatttgaactttgtccctcgagattacaatgtcagactcttactactgaactgacacgtcacggactttcaa |
10338552 |
T |
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| Q |
907 |
aattcttttttactc-aatgaaatattcggtaattggtcttttga |
950 |
Q |
| |
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||||||||||||||| ||||||||||||||||| | ||||||||| |
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| T |
10338553 |
aattcttttttactcaaatgaaatattcggtaaattgtcttttga |
10338597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 439 - 512
Target Start/End: Original strand, 33718601 - 33718674
Alignment:
| Q |
439 |
agtataggacaagaaatgcttataaatccaagccttttgttgcttgatgaacctacttctggtttggattctac |
512 |
Q |
| |
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||||| ||||||||| ||||||||||||| || | ||||| ||||||||||| |||||||||||||||||||| |
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| T |
33718601 |
agtattggacaagaattgcttataaatcctagtttgttgtttcttgatgaaccaacttctggtttggattctac |
33718674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 289
Target Start/End: Original strand, 33718367 - 33718451
Alignment:
| Q |
205 |
ataaaaagaagaacaggttttgtagctcaagatgatgttctttaccctcacttaaccgttaccgaaacactagtgttcactgcac |
289 |
Q |
| |
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|||||||||| ||||||||||| | ||||||||||||||||||||||||||||| || |||||||| || || ||||| |||| |
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| T |
33718367 |
ataaaaagaaacacaggttttgtcacacaagatgatgttctttaccctcacttaacggtaaccgaaacgcttgttttcacagcac |
33718451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 804 - 860
Target Start/End: Original strand, 46319450 - 46319506
Alignment:
| Q |
804 |
cactaatagccattttacgactatctccgaggggatttgaactttgtccctcgagat |
860 |
Q |
| |
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|||||| ||||||||||| ||| ||||| |||||||||||||||||||||| ||||| |
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| T |
46319450 |
cactaacagccattttacaactgtctccaaggggatttgaactttgtcccttgagat |
46319506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 796 - 864
Target Start/End: Original strand, 49443567 - 49443635
Alignment:
| Q |
796 |
taaagtgacactaatagccattttacgactatctccgaggggatttgaactttgtccctcgagattaca |
864 |
Q |
| |
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||||||| |||||||| ||||||||| || || ||||||||||||||||||||| ||| ||| ||||| |
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| T |
49443567 |
taaagtgtcactaataaccattttacaaccgtccccgaggggatttgaactttgtaccttgaggttaca |
49443635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 788 - 850
Target Start/End: Original strand, 17178987 - 17179049
Alignment:
| Q |
788 |
ttattaactaaagtgacactaatagccattttacgactatctccgaggggatttgaactttgt |
850 |
Q |
| |
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||||||| ||||||||||| |||| | ||||||| || |||||||| | |||||||||||||| |
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| T |
17178987 |
ttattaattaaagtgacaccaataacaattttacaaccatctccgatgtgatttgaactttgt |
17179049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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