View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2947R-Insertion-4 (Length: 935)
Name: NF2947R-Insertion-4
Description: NF2947R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2947R-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 358 - 589
Target Start/End: Original strand, 20479846 - 20480077
Alignment:
| Q |
358 |
ggttatgtcttcagctcgaataagtggggttaataaattttgagaggtgctatttggtaccgatcaccctcatacgaaagacaagaatgttattgccgtt |
457 |
Q |
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| T |
20479846 |
ggttacgtcttcagctcgaataagtggggttaataaattttgagaggtgctatttggtaccgatcaccctcatacgaaagacaagaatgttatttccgtt |
20479945 |
T |
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| Q |
458 |
cattttttataaaaaggtcagcaaaattttaacttgttacttgacagaaaacatgaggtagtggatgcaaccgctaaattaaatgttttcttcgatttcg |
557 |
Q |
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| T |
20479946 |
cattttttataaaaaggtcagcaaaattttaacttgttacttgacggaaaacatgaggtagtggatacaaccgctaaattaaacgttttcttcgatttcg |
20480045 |
T |
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| Q |
558 |
ttaacggatgtttcataataaatagcattttc |
589 |
Q |
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| T |
20480046 |
ttaacggatgtttcataataaatagcattttc |
20480077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 659 - 891
Target Start/End: Original strand, 20480982 - 20481215
Alignment:
| Q |
659 |
caatttgacggtgtagaaaagttcttatttttatgaagatttttgtgtttaactcaaatatacaatatgaattagtcttcttcttgattcaagctgggca |
758 |
Q |
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| T |
20480982 |
caatttgacggtgtagaaaagttcttatttttatgaagatttttttgtttaactcaaatatacaatatgaattagtcttcttcttgatttaagatgtgca |
20481081 |
T |
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| Q |
759 |
agatttgatggagcaaaacaatgccgcggtttaccatactgttagagaagtttggagtctcttcggatactgagctgctctaccatacctccgatgatca |
858 |
Q |
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| T |
20481082 |
aaatttgctggaccaaaacaatgtcacggtttaccatactgttagagaagtttggagtctctttagatactgagctgctctaccatacctccgatgatca |
20481181 |
T |
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| Q |
859 |
ctttaatctcctt-aagattgatgcagatgaaac |
891 |
Q |
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| T |
20481182 |
cttaaatctccttaaagattgatgcagctgaaac |
20481215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 20479497 - 20479625
Alignment:
| Q |
9 |
ttatttttgttacttcttggttctgtctggacggattcgattagtctggggagttgttgtacttgattttttgaggccgttttttcggtgtcagttgaag |
108 |
Q |
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| T |
20479497 |
ttatttttgttacttcttggttctgtctggacggattcgattagtctggggagttgttgtacttgattttttgaggccgttttttcggtgtcagttgaag |
20479596 |
T |
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| Q |
109 |
cgcttttagagtgatcaaagttctgctgc |
137 |
Q |
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| T |
20479597 |
cgcttttagagtgatcaaagttctgctgc |
20479625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 214 - 317
Target Start/End: Original strand, 20479702 - 20479805
Alignment:
| Q |
214 |
ccctctgtacatttcctagttggtgtaggtgcttccgtcttaaaagggtgtgtagtggatgtttcggtcctaattttgtagctgatcttgtcctctctgc |
313 |
Q |
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| T |
20479702 |
ccctctgtacatttcctagttggtgtatgtgtttcggtcttaaaagggtgtgtagtggatgtttcggtcctaattttgtagcctatcttgtcctctctgc |
20479801 |
T |
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| Q |
314 |
taca |
317 |
Q |
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|||| |
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| T |
20479802 |
taca |
20479805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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