View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2947R-Insertion-7 (Length: 775)

Name: NF2947R-Insertion-7
Description: NF2947R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2947R-Insertion-7
NF2947R-Insertion-7
[»] chr1 (7 HSPs)
chr1 (9-775)||(46526484-46527248)
chr1 (210-326)||(926477-926593)
chr1 (216-326)||(5108479-5108589)
chr1 (210-324)||(43912226-43912340)
chr1 (280-326)||(926611-926657)
chr1 (272-327)||(901297-901351)
chr1 (287-326)||(5108620-5108659)
[»] chr6 (2 HSPs)
chr6 (210-326)||(16266760-16266876)
chr6 (287-326)||(16266901-16266940)
[»] chr3 (4 HSPs)
chr3 (210-327)||(1106454-1106571)
chr3 (662-754)||(3441248-3441339)
chr3 (280-326)||(1106390-1106436)
chr3 (633-718)||(3450391-3450472)
[»] chr7 (10 HSPs)
chr7 (210-326)||(42951343-42951459)
chr7 (211-326)||(1382274-1382389)
chr7 (211-326)||(1388379-1388494)
chr7 (280-346)||(23741244-23741309)
chr7 (210-335)||(23741101-23741226)
chr7 (277-327)||(1355925-1355975)
chr7 (282-344)||(1356031-1356091)
chr7 (280-327)||(1382208-1382255)
chr7 (280-327)||(1388313-1388360)
chr7 (296-326)||(42951302-42951332)
[»] chr8 (7 HSPs)
chr8 (210-326)||(22570070-22570185)
chr8 (222-335)||(16906882-16906995)
chr8 (210-345)||(10442130-10442263)
chr8 (638-720)||(3576426-3576510)
chr8 (277-335)||(16906797-16906855)
chr8 (611-659)||(3567103-3567151)
chr8 (280-324)||(10442068-10442112)
[»] chr2 (4 HSPs)
chr2 (224-327)||(34236497-34236600)
chr2 (210-324)||(11460338-11460452)
chr2 (210-327)||(19251879-19251998)
chr2 (280-326)||(34236418-34236464)
[»] chr4 (2 HSPs)
chr4 (225-316)||(2366010-2366101)
chr4 (277-310)||(2366130-2366163)
[»] chr5 (3 HSPs)
chr5 (240-325)||(22736998-22737083)
chr5 (210-326)||(33870841-33870957)
chr5 (277-328)||(22736894-22736945)


Alignment Details
Target: chr1 (Bit Score: 661; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 9 - 775
Target Start/End: Original strand, 46526484 - 46527248
Alignment:
Q  9 gagtatagggatcctagctaatctgattcaaaattgatcttttattgatgtatgttgtcaaaacaaagcaataagacgtatatcattattaccaacgagt 108  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46526484 gagtatagggatcctagctaatctgatttaaaattgatcttttattgatgtatgttgtcaaaacaaagcaataagacgtatatcattattaccaacgagt 46526583  T
Q  109 aaattttttgaagttgtgtccgatttagtttatatgataatgttgatattgttaagctgtgtatattttgttgttactcaaactccgacttgatcattgg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46526584 aaattttttgaagttgtgtccgatttagtttatatgataatgttgatattgttaagctgtgtatattttgttgttactcaaactccgacttgatcattgg 46526683  T
Q  209 cgttttgttgaacaagtttcagatttataggacaaacaatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatca 308  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46526684 cgttttgttgaacaagtttcagatttataggacaaagaatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatca 46526783  T
Q  309 aaattgaaagttgcaaaaaagaggaaaacttaagggggttaaaatgttgcnnnnnnnaataggtcaaaattgcaagtaatgcaaaagttatgggacnnnn 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||       |||||||||||||||||||||||||||||||||||||||        
T  46526784 aaattgaaagttgcaaaaaagaggaaaacttaagggggttaaaatgtggc-ttttttaataggtcaaaattgcaagtaatgcaaaagttatgggacaaaa 46526882  T
Q  409 nnntgcatttaaatctacctaaaacaacttaacannnnnnnnnnggtaactttatacattttagtaaaatagttacaccacacattctcagcattaagat 508  Q
       |||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||    
T  46526883 aaatgcatttaaatctacctaaaacaacttaaca-tttttttttggtaactttatacattttagtaaaatagttacaccgcatattctcagcattaaaat 46526981  T
Q  509 atattttgttcaatttatgaggaacaaagagatgaggtaatgcactatgcagtaaatttaaatgctactacaagcctactactagctactacctcgttcg 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46526982 atattttgttcaatttatgaggaacaaagagatgaggtaatgcactatgcagtaaatttaaatgctactacaagcctactactagctactacctcgttcg 46527081  T
Q  609 tatgccctgtagaagcaaaacaaaagccttaaattgaggcatctaacaattactggtactgaatcacacaatgtgacttgtccatacatgctttaaattc 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46527082 tatgccctgtagaagcaaaacaaaagccttaaattgaggcatctaacaattactggtactgaatcacacaatgtgacttgtccatacatgctttaaattc 46527181  T
Q  709 aattctggatactgccacggtggtaggtttaggataggcctgctgcacctgtacaaagatcatatac 775  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46527182 aattctggatactgccacggtggtaggtttaggataggcctgctgcacctgtacaaagatcatatac 46527248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 210 - 326
Target Start/End: Complemental strand, 926593 - 926477
Alignment:
Q  210 gttttgttgaacaagtttcagatttataggacaaacaatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaa 309  Q
    |||||||||||||||||||||||||||||  |||| ||||||||||| |||| |||||||| ||||||| | |||||| || |||| |||||||||||||    
T  926593 gttttgttgaacaagtttcagatttatagagcaaagaatatggcttgggactggtttcttgatcttctaatatcttgagtggttgactttgaatgatcaa 926494  T
Q  310 aattgaaagttgcaaaa 326  Q
    |||||||||||| ||||    
T  926493 aattgaaagttgtaaaa 926477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 216 - 326
Target Start/End: Complemental strand, 5108589 - 5108479
Alignment:
Q  216 ttgaacaagtttcagatttataggacaaacaatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaaattga 315  Q
    |||| ||||||||||||||||||| || | |||||| || | ||||||||||||| ||||||| |||||| ||||||||||||||||| |||||||||||    
T  5108589 ttgagcaagtttcagatttatagggcatagaatatgactcgtgacttgtttcttgatcttctagtgtcttaaatgattgattttgaatcatcaaaattga 5108490  T
Q  316 aagttgcaaaa 326  Q
    |||||||||||    
T  5108489 aagttgcaaaa 5108479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 210 - 324
Target Start/End: Complemental strand, 43912340 - 43912226
Alignment:
Q  210 gttttgttgaacaagtttcagatttataggacaaacaatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaa 309  Q
    |||||||||| ||||||||||||||||||| |||||||| ||||||  |||  || ||||| |||||||||||| |||||  ||||| || |||||| ||    
T  43912340 gttttgttgagcaagtttcagatttatagggcaaacaatgtggcttacgaccggtgtcttgatcttctattgtcctgaatagttgatcttaaatgattaa 43912241  T
Q  310 aattgaaagttgcaa 324  Q
    ||||||| |||||||    
T  43912240 aattgaaggttgcaa 43912226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 280 - 326
Target Start/End: Original strand, 926611 - 926657
Alignment:
Q  280 tgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaa 326  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  926611 tgtcttgaatggttgattttgaatgatcaaaattgaaagttgcaaaa 926657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 901297 - 901351
Alignment:
Q  272 tcttctattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaaa 327  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||| |||||||||    
T  901297 tcttctagtgtcttgaatgtttgattttgaatg-tcaaaattgaaaattgcaaaaa 901351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 287 - 326
Target Start/End: Original strand, 5108620 - 5108659
Alignment:
Q  287 aatgattgattttgaatgatcaaaattgaaagttgcaaaa 326  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  5108620 aatggttgattatgaatgatcaaaattgaaagttgcaaaa 5108659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 4e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 210 - 326
Target Start/End: Complemental strand, 16266876 - 16266760
Alignment:
Q  210 gttttgttgaacaagtttcagatttataggacaaacaatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaa 309  Q
    |||||||||| ||||||||||||||||||| |||| ||||||||||| |||| |||||||| |||||| |||||||||||| ||||||||||||||||||    
T  16266876 gttttgttgagcaagtttcagatttatagggcaaagaatatggcttgggactggtttcttgatcttcttttgtcttgaatggttgattttgaatgatcaa 16266777  T
Q  310 aattgaaagttgcaaaa 326  Q
    |||||||||||||||||    
T  16266776 aattgaaagttgcaaaa 16266760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 287 - 326
Target Start/End: Original strand, 16266901 - 16266940
Alignment:
Q  287 aatgattgattttgaatgatcaaaattgaaagttgcaaaa 326  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  16266901 aatggttgattttaaatgatcaaaattgaaagttgcaaaa 16266940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 4e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 210 - 327
Target Start/End: Original strand, 1106454 - 1106571
Alignment:
Q  210 gttttgttgaacaagtttcagatttataggacaaacaatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaa 309  Q
    |||||||||| ||||||||||||||||||| |||| |||| ||||||||| | |||||||| ||||||||| |  |||||| |||||||||| |||||||    
T  1106454 gttttgttgagcaagtttcagatttatagggcaaagaatacggcttgagattggtttcttgatcttctattcttgtgaatggttgattttgattgatcaa 1106553  T
Q  310 aattgaaagttgcaaaaa 327  Q
    ||||||||||||||||||    
T  1106554 aattgaaagttgcaaaaa 1106571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 662 - 754
Target Start/End: Original strand, 3441248 - 3441339
Alignment:
Q  662 tggtactgaatcacacaatgtgacttgtccatacatgctttaaattcaattctggatactgccacggtggtaggtttaggataggcctgctgc 754  Q
    |||||||||||||| ||| |||| ||||||||||||| ||||||||||||| ||||||||||||  |||||||| |||||||  |||||||||    
T  3441248 tggtactgaatcacccaa-gtgaattgtccatacatgttttaaattcaattatggatactgccaatgtggtagggttaggattcgcctgctgc 3441339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 280 - 326
Target Start/End: Complemental strand, 1106436 - 1106390
Alignment:
Q  280 tgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaa 326  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  1106436 tgtcttgaatgattgattttgaatgaacaaaattgaaagttgcaaaa 1106390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 633 - 718
Target Start/End: Original strand, 3450391 - 3450472
Alignment:
Q  633 agccttaaattgaggcatctaacaattactggtactgaatcacacaatgtgacttgtccatacatgctttaaattcaattctggat 718  Q
    |||| ||| ||||||||||||||||||   ||||||||||||| || ||||| |||| |||||||| ||||||||||||| |||||    
T  3450391 agccataagttgaggcatctaacaatt---ggtactgaatcaccca-tgtgatttgtacatacatgttttaaattcaattatggat 3450472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 210 - 326
Target Start/End: Original strand, 42951343 - 42951459
Alignment:
Q  210 gttttgttgaacaagtttcagatttataggacaaacaatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaa 309  Q
    |||||||||| ||||||||||||| |||||  ||| ||||||||||| ||||  ||||||| |||| || ||||||||||| ||||||||||||||||||    
T  42951343 gttttgttgagcaagtttcagattcatagggtaaataatatggcttgcgactgatttcttgatcttttactgtcttgaatggttgattttgaatgatcaa 42951442  T
Q  310 aattgaaagttgcaaaa 326  Q
    |||||||||||||||||    
T  42951443 aattgaaagttgcaaaa 42951459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 211 - 326
Target Start/End: Original strand, 1382274 - 1382389
Alignment:
Q  211 ttttgttgaacaagtttcagatttataggacaaacaatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaa 310  Q
    ||||||| | ||||||||| ||||||||| |||| |||| | |||||||||||||| |||   |||||  |||||||||| |||||||||||||||||||    
T  1382274 ttttgtttagcaagtttcaaatttatagggcaaagaatacgacttgagacttgttttttgactttctaccgtcttgaatgtttgattttgaatgatcaaa 1382373  T
Q  311 attgaaagttgcaaaa 326  Q
    ||| ||| ||| ||||    
T  1382374 attaaaaattgtaaaa 1382389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 211 - 326
Target Start/End: Original strand, 1388379 - 1388494
Alignment:
Q  211 ttttgttgaacaagtttcagatttataggacaaacaatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaa 310  Q
    ||||||| | ||||||||| ||||||||| |||| |||| | |||||||||||||| |||   |||||  |||||||||| |||||||||||||||||||    
T  1388379 ttttgtttagcaagtttcaaatttatagggcaaagaatacgacttgagacttgttttttgactttctaccgtcttgaatgtttgattttgaatgatcaaa 1388478  T
Q  311 attgaaagttgcaaaa 326  Q
    ||| ||| ||| ||||    
T  1388479 attaaaaattgtaaaa 1388494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 280 - 346
Target Start/End: Original strand, 23741244 - 23741309
Alignment:
Q  280 tgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaaaagaggaaaacttaaggggg 346  Q
    ||||||||||| |||||||| |||||||||||||||||||||||| | | ||||||||||| |||||    
T  23741244 tgtcttgaatggttgattttaaatgatcaaaattgaaagttgcaacaca-aggaaaacttagggggg 23741309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 210 - 335
Target Start/End: Complemental strand, 23741226 - 23741101
Alignment:
Q  210 gttttgttgaacaagtttcagatttataggacaaacaatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaa 309  Q
    ||||||||||  |||||| |||||||||   |||| | |||| ||||| ||| ||||||||  ||||||   ||||||||| |||||||| ||| |||||    
T  23741226 gttttgttgagtaagttttagatttataatgcaaagattatgtcttgaaactggtttcttgaacttctacgttcttgaatggttgattttaaattatcaa 23741127  T
Q  310 aattgaaagttgcaaaaaagaggaaa 335  Q
    |||||||| |||||| ||| ||||||    
T  23741126 aattgaaatttgcaacaaaaaggaaa 23741101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 277 - 327
Target Start/End: Complemental strand, 1355975 - 1355925
Alignment:
Q  277 tattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaaa 327  Q
    ||||||| | |||| |||| |||||||||||||||||||||||||||||||    
T  1355975 tattgtcctaaatggttgagtttgaatgatcaaaattgaaagttgcaaaaa 1355925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 282 - 344
Target Start/End: Original strand, 1356031 - 1356091
Alignment:
Q  282 tcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaaaagaggaaaacttaaggg 344  Q
    ||||||||| |||||||| ||||||||||||| ||||||| |||||   ||||||||||||||    
T  1356031 tcttgaatggttgatttttaatgatcaaaattaaaagttgtaaaaa--gggaaaacttaaggg 1356091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 1382255 - 1382208
Alignment:
Q  280 tgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaaa 327  Q
    |||| |||||| |||  |||||||||||||||||||||||||||||||    
T  1382255 tgtcatgaatggttgggtttgaatgatcaaaattgaaagttgcaaaaa 1382208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 1388360 - 1388313
Alignment:
Q  280 tgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaaa 327  Q
    |||| |||||| |||  |||||||||||||||||||||||||||||||    
T  1388360 tgtcatgaatggttgggtttgaatgatcaaaattgaaagttgcaaaaa 1388313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 296 - 326
Target Start/End: Complemental strand, 42951332 - 42951302
Alignment:
Q  296 ttttgaatgatcaaaattgaaagttgcaaaa 326  Q
    |||||||||||||||||||||||||||||||    
T  42951332 ttttgaatgatcaaaattgaaagttgcaaaa 42951302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 9e-26; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 210 - 326
Target Start/End: Original strand, 22570070 - 22570185
Alignment:
Q  210 gttttgttgaacaagtttcagatttataggacaaacaatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaa 309  Q
    |||||||||| |||| |||||||||||||| |||| |||||| ||||||| | |||||||| ||||||| ||||| ||||  ||||||||||||||||||    
T  22570070 gttttgttgagcaaggttcagatttatagggcaaa-aatatgccttgagattggtttcttgatcttctactgtctcgaatagttgattttgaatgatcaa 22570168  T
Q  310 aattgaaagttgcaaaa 326  Q
    |||| ||||||||||||    
T  22570169 aattaaaagttgcaaaa 22570185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 222 - 335
Target Start/End: Original strand, 16906882 - 16906995
Alignment:
Q  222 aagtttcagatttataggacaaacaatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaaattgaaagttg 321  Q
    |||||||||||||||||| |||| ||||||||||| |||| ||| |||  ||||||||||||||||||| ||||| |||||| || ||| ||||||||||    
T  16906882 aagtttcagatttatagggcaaagaatatggcttgggactagttgcttcatcttctattgtcttgaatggttgatgttgaataattaaatttgaaagttg 16906981  T
Q  322 caaaaaagaggaaa 335  Q
    ||||| || |||||    
T  16906982 caaaagaggggaaa 16906995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 210 - 345
Target Start/End: Original strand, 10442130 - 10442263
Alignment:
Q  210 gttttgttgaacaagtttcagatttataggacaaacaatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaa 309  Q
    |||||||||| ||||||| |||||||||   |||| ||||||  |||  ||| |||||||| |||||||  |||||||||| ||||||||||||||| ||    
T  10442130 gttttgttgagcaagttttagatttataacgcaaagaatatgtgttggaactggtttcttgatcttctaccgtcttgaatggttgattttgaatgat-aa 10442228  T
Q  310 aattgaaagttgcaaaaaagaggaaaacttaagggg 345  Q
    |||| |||||||||| | | ||| ||||||||||||    
T  10442229 aattaaaagttgcaatataaagg-aaacttaagggg 10442263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 638 - 720
Target Start/End: Original strand, 3576426 - 3576510
Alignment:
Q  638 taaattgaggcatctaacaattactggtactgaatcacacaatgtgacttgtcc-atacatgc-tttaaattcaattctggatac 720  Q
    ||||||||||||||||||| ||  ||||| |||||||| ||||||||||||||| |||||||| ||||||||||| | |||||||    
T  3576426 taaattgaggcatctaacagttgttggtattgaatcacccaatgtgacttgtcctatacatgcttttaaattcaagtatggatac 3576510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 277 - 335
Target Start/End: Complemental strand, 16906855 - 16906797
Alignment:
Q  277 tattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaaaagaggaaa 335  Q
    |||||||||||||| |||||||||||| ||||  ||||||||||||||||| |||||||    
T  16906855 tattgtcttgaatggttgattttgaataatcatgattgaaagttgcaaaaaggaggaaa 16906797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 611 - 659
Target Start/End: Original strand, 3567103 - 3567151
Alignment:
Q  611 tgccctgtagaagcaaaacaaaagccttaaattgaggcatctaacaatt 659  Q
    |||| ||| ||||||||||||||||| ||||||||||||||||||||||    
T  3567103 tgccgtgtggaagcaaaacaaaagccataaattgaggcatctaacaatt 3567151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 10442112 - 10442068
Alignment:
Q  280 tgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaa 324  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  10442112 tgtcttgaattgttgattttgaatgatcaaaattgaaagttgcaa 10442068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 224 - 327
Target Start/End: Original strand, 34236497 - 34236600
Alignment:
Q  224 gtttcagatttataggacaaacaatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaaattgaaagttgca 323  Q
    |||||| ||||||| | |||||||||||||||| |||| |||||||| ||||||| ||||||||||| || ||||||||||||||||||| ||||||| |    
T  34236497 gtttcaaatttataaggcaaacaatatggcttgggactggtttcttgatcttctaatgtcttgaatggttaattttgaatgatcaaaattaaaagttgta 34236596  T
Q  324 aaaa 327  Q
    ||||    
T  34236597 aaaa 34236600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 210 - 324
Target Start/End: Original strand, 11460338 - 11460452
Alignment:
Q  210 gttttgttgaacaagtttcagatttataggacaaacaatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaa 309  Q
    |||||||||| ||| ||||||||||||||| |||| ||| ||||||| |||  |||||||| ||||||| ||||||||||  ||||| || ||||| |||    
T  11460338 gttttgttgagcaaatttcagatttatagggcaaataatgtggcttgggaccggtttcttgatcttctactgtcttgaatagttgatcttaaatgaccaa 11460437  T
Q  310 aattgaaagttgcaa 324  Q
    |||||||||||||||    
T  11460438 aattgaaagttgcaa 11460452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 210 - 327
Target Start/End: Complemental strand, 19251998 - 19251879
Alignment:
Q  210 gttttgttgaacaagtttcagatttataggacaaacaatatggcttgagacttgtttcttgtt--cttctattgtcttgaatgattgattttgaatgatc 307  Q
    |||||||||| ||||||| ||||||||||| |||| |||||| |||| |||| |||| || ||  |||||| ||| ||||||| ||||||||||||||||    
T  19251998 gttttgttgagcaagttttagatttatagggcaaagaatatgacttgcgactggtttttttttatcttctactgttttgaatggttgattttgaatgatc 19251899  T
Q  308 aaaattgaaagttgcaaaaa 327  Q
     ||||||||| |||||||||    
T  19251898 gaaattgaaatttgcaaaaa 19251879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 280 - 326
Target Start/End: Complemental strand, 34236464 - 34236418
Alignment:
Q  280 tgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaa 326  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  34236464 tgtcttgaatggttgattttgaatgatcaaaattgaaagttgcaaaa 34236418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 225 - 316
Target Start/End: Complemental strand, 2366101 - 2366010
Alignment:
Q  225 tttcagatttataggacaaacaatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaaattgaa 316  Q
    ||||| ||||||||| |||| ||||||||||  |||| |||||||| ||||||| ||||||||||| |||||||||||||| ||||||||||    
T  2366101 tttcaaatttatagggcaaagaatatggcttaggactggtttcttgatcttctactgtcttgaatggttgattttgaatgagcaaaattgaa 2366010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 2366130 - 2366163
Alignment:
Q  277 tattgtcttgaatgattgattttgaatgatcaaa 310  Q
    ||||||||||||||| ||||||||||||||||||    
T  2366130 tattgtcttgaatgagtgattttgaatgatcaaa 2366163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 22736998 - 22737083
Alignment:
Q  240 acaaacaatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaa 325  Q
    ||||| ||||||| |||||| | |||||||| |||||||  |||||||||| |||||||||||||||||| |||||||||||||||    
T  22736998 acaaagaatatggtttgagattggtttcttgatcttctaccgtcttgaatggttgattttgaatgatcaagattgaaagttgcaaa 22737083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 210 - 326
Target Start/End: Complemental strand, 33870957 - 33870841
Alignment:
Q  210 gttttgttgaacaagtttcagatttataggacaaacaatatggcttgagacttgtttcttgttcttctattgtcttgaatgattgattttgaatgatcaa 309  Q
    |||||||||| ||||||||| |||||||||  |||   ||||| ||| |  | |||||||| ||||||| | |||| |||||||||||||||||||||||    
T  33870957 gttttgttgagcaagtttcatatttatagggaaaaaggtatggtttgggtttggtttcttgatcttctactttcttaaatgattgattttgaatgatcaa 33870858  T
Q  310 aattgaaagttgcaaaa 326  Q
    |||| ||||||| ||||    
T  33870857 aattaaaagttgtaaaa 33870841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 277 - 328
Target Start/End: Complemental strand, 22736945 - 22736894
Alignment:
Q  277 tattgtcttgaatgattgattttgaatgatcaaaattgaaagttgcaaaaaa 328  Q
    |||||||||||||  |||||||| ||||||||||||| ||| ||||||||||    
T  22736945 tattgtcttgaatagttgattttaaatgatcaaaattaaaaattgcaaaaaa 22736894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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