View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2949_high_12 (Length: 323)
Name: NF2949_high_12
Description: NF2949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2949_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 32 - 301
Target Start/End: Original strand, 33942465 - 33942743
Alignment:
| Q |
32 |
aatactttctcttcatactccatctgcaaagtctatcattaaaagattgattatggcaagata----------tgtaatcctcaccatatgactaagccg |
121 |
Q |
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| T |
33942465 |
aatactttctcttc-tactccatctgcaaagtctatcattaaaagattgattatggcaagatatgtaatgatatgtaatcctcgccatatgactaagccg |
33942563 |
T |
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| Q |
122 |
ctccttctctctctccaacctcaacaccaaaaataaacaaatgaaagtgaactttacatatatagacttagctagggttttgcttggaagttaagaaaag |
221 |
Q |
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| T |
33942564 |
ctccttctctctctccaacctcaacaccaaaaataaacaaatgaaagtgagctttacatatctagacttagctagggttttgcttggaagttaagaaaag |
33942663 |
T |
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| Q |
222 |
tgaaaagacgcataaacctagaaattgaaagttaccttaatttataaagggattttgaagaagaagccaaagaagaagca |
301 |
Q |
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| T |
33942664 |
tgaaaagacgcataaacctagaaattgaaagttaccttaatttataaagggattttgaagaagaagccaaagaagaagca |
33942743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 33942408 - 33942445
Alignment:
| Q |
1 |
tgtagtctctcttttactcccaactgaagacaatactt |
38 |
Q |
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| T |
33942408 |
tgtagtctctcttttacccccaactgaagacaatactt |
33942445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 279
Target Start/End: Original strand, 33934466 - 33934540
Alignment:
| Q |
205 |
ttggaagttaagaaaagtgaaaagacgcataaacctagaaatt-gaaagttaccttaatttataaagggattttga |
279 |
Q |
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||||||||||| |||| |||||| ||| |||||| |||| || ||||||||||||||||||||||| |||||||| |
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| T |
33934466 |
ttggaagttaaaaaaactgaaaa-acgattaaaccaagaattttgaaagttaccttaatttataaagagattttga |
33934540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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