View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2949_high_14 (Length: 249)
Name: NF2949_high_14
Description: NF2949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2949_high_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 48849287 - 48849046
Alignment:
| Q |
9 |
agaagaaggatttgttttgtttgcatgtgaaaggagaagtagtttgtcgggcagtgagttgttgtcgattgggggaatgagtcctgtctttttattttga |
108 |
Q |
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| T |
48849287 |
agaagaaggatttgttttgtttgcatgtgaaaggagaagtagtttgtcgggcagtgagttgttgttgattgggggaatgagtcttgtctttttattttga |
48849188 |
T |
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| Q |
109 |
cctcgtaacaagggcaaacactt-ggtcttatagaaatgactctaatcctattcctctccttccataaacctaaccactgacctattcactgaaaacacc |
207 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48849187 |
cctcgtaacaagggaaaacactttggtcttatagaaatgactctaatcctattcctctccttccataaacctaaccactgacctattcactgaaaacacc |
48849088 |
T |
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| Q |
208 |
agctatgttttacctctatcactgagccacattcattactcc |
249 |
Q |
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| T |
48849087 |
agctatgttttacctctatcactgagccacattcattactcc |
48849046 |
T |
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