View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2949_high_2 (Length: 657)

Name: NF2949_high_2
Description: NF2949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2949_high_2
NF2949_high_2
[»] chr2 (1 HSPs)
chr2 (20-649)||(41358523-41359142)


Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 20 - 649
Target Start/End: Original strand, 41358523 - 41359142
Alignment:
Q  20 ggatccaatatcatatttcccttctgctctcccaccaaggtgagctataaggctctggtaccacttgtttccgagtgaggggaagcgccgagagcaacag 119  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41358523 ggatccaatatcatatttctcttctgctctcccaccaaggtgagctataaggctctggtaccacttgtttccgagtgaggggaagcgccgagagcaacag 41358622  T
Q  120 gctaatgatagaggatcatcgatacaccacatctttaaccaaaactttcgatattgagtatataaattacctctctatctaatatccgagttcattcata 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41358623 gctaatgatagaggatcatcgatacaccacatctttaaccaaaaccttcgatattgagtatatagattacctctctatctaatatccgagttcattcata 41358722  T
Q  220 aatagtttcctaaagcttgtatatttcttatgaattaaatgtgagttccatgacttgagaaattttttgagttccgtatcaannnnnnnnnnaaacaaat 319  Q
    |||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||          ||||||||    
T  41358723 aatagtttcctaaagcatgtatatttcttatgaattaaatgcgatttccatgacttgagaaattttttgagttccgtatcaa-ttttttttaaaacaaat 41358821  T
Q  320 atatatagagtagtataatccaacagagtacctataatatttgttaattttagttttactaacctgtgtgtctaaatcagatgaagaatttgt---agaa 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||    
T  41358822 atatatagagtagtataatccaacagagtacctataatatttgttaattttagttttactaacctgtgtgtctaaatcagatgaagaatttgtagaagaa 41358921  T
Q  417 ggagaatcactgagcaaggtgttaaatgacattgatccagagttgttccaattactaacaatctccatccttgcatgcagtggctgtaaacccagtggcc 516  Q
    | |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41358922 gaagaaccactaagcaaggtgttaaatgacattgatccagagttgttcccattactaacaatctccatccttgcatgcagtggctgtaaacccagtggcc 41359021  T
Q  517 acccctcattctaacatcaaatccattgtat-nnnnnnnnnncatgaatacaatgaaaattcatgaggaaaattccaaaaactaacatatgaatataata 615  Q
    |||||||||||||||||||||||||||||||           ||||||||||||             |||||||||||||||||| ||||||||||||||    
T  41359022 acccctcattctaacatcaaatccattgtataaaaaaaaaaacatgaatacaat-------------gaaaattccaaaaactaatatatgaatataata 41359108  T
Q  616 gtcaaaagagtacctgttgagccatgttcatctc 649  Q
    ||||||||||||||||||||||||||||| ||||    
T  41359109 gtcaaaagagtacctgttgagccatgttcttctc 41359142  T

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