View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2949_low_10 (Length: 352)
Name: NF2949_low_10
Description: NF2949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2949_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 34 - 336
Target Start/End: Original strand, 48145818 - 48146120
Alignment:
| Q |
34 |
gaatatgttaatactttaatagatcttatataatgaatatacttttaattttgagataattaaagaggataaatttctcatttaaattggggattatcct |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48145818 |
gaatatgttaatactttaatagatcgtatacaatgaatatacttttaattttgagataattaaagaggataaatttctcatttaaattggggattatcct |
48145917 |
T |
|
| Q |
134 |
tccttctctttgcaattcgtccttcttttttctcttagtccgtcctcccttatcaaactcttgaggaaattaaagagctaaatcaatgtataaaaattca |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
48145918 |
tccttctctttgcaattcgtccttcttttttctcttagtccgtcctcccttatcaaactcttgaggaaattaaagagctaaatcaatgtataaaaatcca |
48146017 |
T |
|
| Q |
234 |
agaaaacatagaaagaatccaacccagcaataaaaagcctacattatgggggcctaatttgcatttttgttgttaggaacaagaaggaatccttggaaaa |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48146018 |
agaaaacatagaaagaatccaacccagcaataaaaagcctacattatgggggcctaatttgcatttttgttgttaggaacaagaaggaatccttggaaaa |
48146117 |
T |
|
| Q |
334 |
aat |
336 |
Q |
| |
|
||| |
|
|
| T |
48146118 |
aat |
48146120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University