View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2949_low_11 (Length: 343)
Name: NF2949_low_11
Description: NF2949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2949_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 332
Target Start/End: Complemental strand, 45392000 - 45391685
Alignment:
| Q |
17 |
ttaaaaccttgaagagacctaacccaaatgactagtcaattaagtggtgagccttatgacttaaaaccattttgctctttcttatcttctcaatatgatt |
116 |
Q |
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| T |
45392000 |
ttaaaaccttgaagagacctaacccaaatgactagtcaattaagtggtgagccttatgacttaaaatcattttgctctttcttatcttctcaatatgatt |
45391901 |
T |
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| Q |
117 |
cataacattgccaccattctatcggcaatgattcaatggtagtccttttcaatttggtggtatcacaacatggatagtgtttgggatcaatgtaatagaa |
216 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45391900 |
cataacattgccaccattctatcgacaatgattcaatggtagtccttttcaatttggtggtatcacaacatggatagtgtttgggatcaatgtaatagaa |
45391801 |
T |
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| Q |
217 |
attaaggaatatatttaatttcattaagcatgtaaactaactatcgaagagagcttgtatgggatgttaggacccccttccagcttatacagtaatcttg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45391800 |
attaaggaatatatttaatttcattaagcatgtaaactaactatcgaagagagcttgtatgggatgttaggactcccttccagcttatacagtaatcttg |
45391701 |
T |
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| Q |
317 |
agtttgaatctatatt |
332 |
Q |
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|||||||||||||||| |
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| T |
45391700 |
agtttgaatctatatt |
45391685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 158 - 332
Target Start/End: Complemental strand, 45377040 - 45376870
Alignment:
| Q |
158 |
gtccttttcaatttggtggtatcacaacatggatagtgtttgggatcaatgtaatagaaattaaggaatatatttaatttcattaagcatgtaaactaac |
257 |
Q |
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||||||||||||||||||| |||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
45377040 |
gtccttttcaatttggtgggttcacaaaatgaatagtgtttgtgatcaatgtaatagaaattaaggaatatatttaattttgttaagcatgcaaacta-- |
45376943 |
T |
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| Q |
258 |
tatcgaagagagcttgtatgggatgttaggacccccttccagcttatacagtaatcttgagtttgaatctatatt |
332 |
Q |
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||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45376942 |
--tcgaaaagagcttgtatgggatgttaggactcccttccaccttatacagtaatcttgagtttgaatctatatt |
45376870 |
T |
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