View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2949_low_12 (Length: 333)

Name: NF2949_low_12
Description: NF2949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2949_low_12
NF2949_low_12
[»] chr4 (4 HSPs)
chr4 (19-226)||(44634602-44634820)
chr4 (223-321)||(44634381-44634479)
chr4 (153-223)||(44398043-44398109)
chr4 (230-262)||(44397891-44397923)
[»] chr7 (2 HSPs)
chr7 (255-320)||(49128650-49128715)
chr7 (145-223)||(49129234-49129312)


Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 44634820 - 44634602
Alignment:
Q  19 attaaagatcttgtttatggatcatgccaagaaggggagacggaagctgaatgtggggcgcaacaatcccaccagcaaggga-----------taacccg 107  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||           |||||||    
T  44634820 attaaagatcttgtttatggatcatgccaagaaggagagacggaagctgaatgtggggcgcaacaatcccaccagcaagggagttatcatgcataacccg 44634721  T
Q  108 aaaaattagtcaatcaaagactcatcactttatatgggaatcctaacaatccttcttaagttcacttgctaaaaaattgatctcactcctctcaaatctc 207  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44634720 aaaaattagacaatcaaagactcatcactttatatgggaatcctaacaatccttcttaagttcacttgctaaaaaattgatctcactcctctcaaatctc 44634621  T
Q  208 ttttgtatgtatgctttgc 226  Q
    |||| ||||||||||||||    
T  44634620 ttttttatgtatgctttgc 44634602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 223 - 321
Target Start/End: Complemental strand, 44634479 - 44634381
Alignment:
Q  223 ttgcccttttttattcataatgtatttcatgtatatatattgaattgaactaaattggatcatctttatctcaaaatgtgcttagcctgatcactcttc 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  44634479 ttgcccttttttattcataatgtatttcatgtatatatattgaattgatctaaattgaatcatctttatctcaaaatgcgcttagcctgatcactcttc 44634381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 44398109 - 44398043
Alignment:
Q  153 acaatccttcttaagttcacttgctaaaaaattgatctcactcctctcaaatctcttttgtatgtatgctt 223  Q
    ||||||||||||||||||||||||||||    | |||||||||||  ||||||||||||||||||||||||    
T  44398109 acaatccttcttaagttcacttgctaaa----tcatctcactccttccaaatctcttttgtatgtatgctt 44398043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 44397923 - 44397891
Alignment:
Q  230 tttttattcataatgtatttcatgtatatatat 262  Q
    ||||| |||||||||||||||||||||||||||    
T  44397923 ttttttttcataatgtatttcatgtatatatat 44397891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 49128715 - 49128650
Alignment:
Q  255 atatatattgaattgaactaaattggatcatctttatctcaaaatgtgcttagcctgatcactctt 320  Q
    ||||| ||||||||||||||||||||  |||||||||||||| || |||||||| ||||| |||||    
T  49128715 atatacattgaattgaactaaattggtgcatctttatctcaacatatgcttagcttgatccctctt 49128650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 49129312 - 49129234
Alignment:
Q  145 gaatcctaacaatccttcttaagttcacttgctaaaaaattgatctcactcctctcaaatctcttttgtatgtatgctt 223  Q
    |||||||| ||||  ||||||||||||||||||||||| || ||||||||| | | || ||||||||  ||||||||||    
T  49129312 gaatcctagcaatgtttcttaagttcacttgctaaaaagttcatctcactcatttaaactctcttttacatgtatgctt 49129234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University