View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2949_low_14 (Length: 298)
Name: NF2949_low_14
Description: NF2949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2949_low_14 |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 96 - 282
Target Start/End: Original strand, 13929644 - 13929830
Alignment:
| Q |
96 |
atcatgaattcatggcttccacaaattcaacacaaaaaataaaacatagattcaattgtaataacctagcttaattcttcactttgattctagcataaat |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13929644 |
atcatgaattcatggcttccacaaattcaacacaaaaaataaaacatagattcaattgtaataacctagcttaattcttcactttgattctagcataaat |
13929743 |
T |
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| Q |
196 |
taaatatgtttacgattccgattctataaacaaaaaagtgaaaatagaaggaataattcacagaagaatcatcttagatgaaacaac |
282 |
Q |
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| T |
13929744 |
taaatatgtttacgattccgattctataaacaaaaaagtgaaaatagaaggaataattcacagaagaagcatcttagatgaaacaac |
13929830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 96 - 282
Target Start/End: Complemental strand, 37473574 - 37473388
Alignment:
| Q |
96 |
atcatgaattcatggcttccacaaattcaacacaaaaaataaaacatagattcaattgtaataacctagcttaattcttcactttgattctagcataaat |
195 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
37473574 |
atcatgaattcatggcttccacggattcaacacaaaaaataaaacatagattcaattgtaataacctagcttaattcttcactttgattccaacataaat |
37473475 |
T |
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| Q |
196 |
taaatatgtttacgattccgattctataaacaaaaaagtgaaaatagaaggaataattcacagaagaatcatcttagatgaaacaac |
282 |
Q |
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| T |
37473474 |
taaatatgtttacgattccgattttataaacaaaaaagtgaaaatagaaggaataattcacacaagaatcatcttagatgaaacaac |
37473388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 44304770 - 44304736
Alignment:
| Q |
96 |
atcatgaattcatggcttccacaaattcaacacaa |
130 |
Q |
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| T |
44304770 |
atcatgaattcatggcttccacaaatttaacacaa |
44304736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 126
Target Start/End: Complemental strand, 32980243 - 32980213
Alignment:
| Q |
96 |
atcatgaattcatggcttccacaaattcaac |
126 |
Q |
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| T |
32980243 |
atcatgaattcatggcttccacaaattcaac |
32980213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 22424 - 22476
Alignment:
| Q |
96 |
atcatgaattcatggcttccacaaattc-aacacaaaaaataaaacatagatt |
147 |
Q |
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|||||||||||||| ||||||||||||| ||||||| || |||||| |||||| |
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| T |
22424 |
atcatgaattcatgacttccacaaattcaaacacaacaattaaaacctagatt |
22476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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