View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2949_low_15 (Length: 253)
Name: NF2949_low_15
Description: NF2949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2949_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 42631567 - 42631796
Alignment:
| Q |
8 |
catcatcacgaacaactttactagctggtaaaatagttagagacaaaacagtccctagtgacataaaagccataaaaccaatataagttccatcattaac |
107 |
Q |
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| T |
42631567 |
catcatcacgaacaactttactagctggtaaaatagttagagacaaaacagtccctagtgacataaaagccataaaaccaatataagttccatcattaac |
42631666 |
T |
|
| Q |
108 |
cgtagcagcttgatcaccacgattgtaattaagaataaaaggaatcaacccaccaataacaccacccatgttgaaaatactccagaatattgaaatgtaa |
207 |
Q |
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| T |
42631667 |
cgtagcagcttgatcaccacgattgtaattaagaataaaaggaatcaacccaccaataacaccacccatgttgaaaatactccagaaaattgaaatgtaa |
42631766 |
T |
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| Q |
208 |
gttcctttacggttcatgggtggataagat |
237 |
Q |
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| T |
42631767 |
gttcctttacggttcatgggtggataagat |
42631796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 42638711 - 42638940
Alignment:
| Q |
8 |
catcatcacgaacaactttactagctggtaaaatagttagagacaaaacagtccctagtgacataaaagccataaaaccaatataagttccatcattaac |
107 |
Q |
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|||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
42638711 |
catcatcacgaacaactttactggctggtaaaattgtcagagacaaaacagtccctagtgacataaaagccataaaaccaatataagtgccatcgttaac |
42638810 |
T |
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| Q |
108 |
cgtagcagcttgatcaccacgattgtaattaagaataaaaggaatcaacccaccaataacaccacccatgttgaaaatactccagaatattgaaatgtaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| ||||||||||||||||| |||||||||||| |
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| T |
42638811 |
cgtagcagcttgatcaccacgattgtaattaagaataaaaggaattaaaccaccaataaccccacccatattgaaaatactccagaaaattgaaatgtaa |
42638910 |
T |
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| Q |
208 |
gttcctttacggttcatgggtggataagat |
237 |
Q |
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||||||||||| |||||||||||||||||| |
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| T |
42638911 |
gttcctttacgattcatgggtggataagat |
42638940 |
T |
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