View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2949_low_16 (Length: 250)
Name: NF2949_low_16
Description: NF2949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2949_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 23995648 - 23995425
Alignment:
| Q |
17 |
aacattatctcattattcagtgcataaatagaagaagtattaacactcttttcctgagctaagacatgttcacacgcgccaattgcatagtaagcatatt |
116 |
Q |
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| T |
23995648 |
aacattatctcattattcagtgcataaatagaagaagtattaacactcttttcctgagctaagacatgttcacacgcgccaattgcatagtaagcatatt |
23995549 |
T |
|
| Q |
117 |
gcacagacatgattaggagatctggatcctcctcactaaacgcatcctttaactcattaactgcaccactgtaagattcagcacaatatttgatgactcc |
216 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23995548 |
gcacagacatgattatgagatctggatcctcctcactaaacgcatcctttaactcattaactgcaccactgtaagattcagcacaatatttgatgactcc |
23995449 |
T |
|
| Q |
217 |
agaagaagggtatttgttcttcat |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
23995448 |
agaagaagggtatttgttcttcat |
23995425 |
T |
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