View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2949_low_2 (Length: 657)

Name: NF2949_low_2
Description: NF2949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2949_low_2
NF2949_low_2
[»] chr2 (1 HSPs)
chr2 (20-649)||(41358523-41359142)


Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 20 - 649
Target Start/End: Original strand, 41358523 - 41359142
Alignment:
Q  20 ggatccaatatcatatttcccttctgctctcccaccaaggtgagctataaggctctggtaccacttgtttccgagtgaggggaagcgccgagagcaacag 119  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41358523 ggatccaatatcatatttctcttctgctctcccaccaaggtgagctataaggctctggtaccacttgtttccgagtgaggggaagcgccgagagcaacag 41358622  T
Q  120 gctaatgatagaggatcatcgatacaccacatctttaaccaaaactttcgatattgagtatataaattacctctctatctaatatccgagttcattcata 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41358623 gctaatgatagaggatcatcgatacaccacatctttaaccaaaaccttcgatattgagtatatagattacctctctatctaatatccgagttcattcata 41358722  T
Q  220 aatagtttcctaaagcttgtatatttcttatgaattaaatgtgagttccatgacttgagaaattttttgagttccgtatcaannnnnnnnnnaaacaaat 319  Q
    |||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||          ||||||||    
T  41358723 aatagtttcctaaagcatgtatatttcttatgaattaaatgcgatttccatgacttgagaaattttttgagttccgtatcaa-ttttttttaaaacaaat 41358821  T
Q  320 atatatagagtagtataatccaacagagtacctataatatttgttaattttagttttactaacctgtgtgtctaaatcagatgaagaatttgt---agaa 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||    
T  41358822 atatatagagtagtataatccaacagagtacctataatatttgttaattttagttttactaacctgtgtgtctaaatcagatgaagaatttgtagaagaa 41358921  T
Q  417 ggagaatcactgagcaaggtgttaaatgacattgatccagagttgttccaattactaacaatctccatccttgcatgcagtggctgtaaacccagtggcc 516  Q
    | |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41358922 gaagaaccactaagcaaggtgttaaatgacattgatccagagttgttcccattactaacaatctccatccttgcatgcagtggctgtaaacccagtggcc 41359021  T
Q  517 acccctcattctaacatcaaatccattgtat-nnnnnnnnnncatgaatacaatgaaaattcatgaggaaaattccaaaaactaacatatgaatataata 615  Q
    |||||||||||||||||||||||||||||||           ||||||||||||             |||||||||||||||||| ||||||||||||||    
T  41359022 acccctcattctaacatcaaatccattgtataaaaaaaaaaacatgaatacaat-------------gaaaattccaaaaactaatatatgaatataata 41359108  T
Q  616 gtcaaaagagtacctgttgagccatgttcatctc 649  Q
    ||||||||||||||||||||||||||||| ||||    
T  41359109 gtcaaaagagtacctgttgagccatgttcttctc 41359142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University