View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2949_low_20 (Length: 234)
Name: NF2949_low_20
Description: NF2949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2949_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 30264396 - 30264171
Alignment:
| Q |
1 |
tcttgtcttcatagagctgatgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30264396 |
tcttgtcttcatagagctgatgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggt |
30264297 |
T |
|
| Q |
101 |
tcccttcaaccatattctcccttttcaattcaatctctgattttggatggagcatattgaaaagttcaataattgaagatgataaatcacctatatggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30264296 |
tcccttcaaccatattctcccttttcaattcaatctctgattttggatggagtatattgaaaagttcaataattgaagatgataaatcacctatatggaa |
30264197 |
T |
|
| Q |
201 |
tggtgacgaaggttcacaggttctgc |
226 |
Q |
| |
|
|||||| ||||||||| || |||||| |
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|
| T |
30264196 |
tggtgaggaaggttcagagtttctgc |
30264171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 30287792 - 30288017
Alignment:
| Q |
1 |
tcttgtcttcatagagctgatgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30287792 |
tcttgtcttcatagagctgatgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggt |
30287891 |
T |
|
| Q |
101 |
tcccttcaaccatattctcccttttcaattcaatctctgattttggatggagcatattgaaaagttcaataattgaagatgataaatcacctatatggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30287892 |
tcccttcaaccatattctcccttttcaattcaatctctgattttggatggagtatattgaaaagttcaataattgaagatgataaatcacctatatggaa |
30287991 |
T |
|
| Q |
201 |
tggtgacgaaggttcacaggttctgc |
226 |
Q |
| |
|
|||||| ||||||||| || |||||| |
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|
| T |
30287992 |
tggtgaggaaggttcagagtttctgc |
30288017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 30271290 - 30271079
Alignment:
| Q |
1 |
tcttgtcttcatagagctgatgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggt |
100 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||| ||||||||||||| |
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| T |
30271290 |
tcttgtctacaaagagctgatgacccttctcttcctttgtcttttccttcacgcaaaccatcacaattgttatctcccaagaaaggttttttcaagtggt |
30271191 |
T |
|
| Q |
101 |
tcccttcaaccatattctcccttttcaattcaatctctgattttggatggagcatattgaaaagttcaataattgaagatgataaatcacctatatggaa |
200 |
Q |
| |
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| |||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||| ||| ||||||||||||| |
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| T |
30271190 |
ttccttcaaccatattctcctttttcaattccttctctgattttggatggagcatagccaaaagctcaatgcttaaagatgacaaaacacctatatggaa |
30271091 |
T |
|
| Q |
201 |
tggtgacgaagg |
212 |
Q |
| |
|
|||||| ||||| |
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|
| T |
30271090 |
tggtgaggaagg |
30271079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 30280899 - 30281110
Alignment:
| Q |
1 |
tcttgtcttcatagagctgatgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggt |
100 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||| ||||||||||||| |
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|
| T |
30280899 |
tcttgtctacaaagagctgatgacccttctcttcctttgtcttttccttcacgcaaaccatcacaattgttatctcccaagaaaggttttttcaagtggt |
30280998 |
T |
|
| Q |
101 |
tcccttcaaccatattctcccttttcaattcaatctctgattttggatggagcatattgaaaagttcaataattgaagatgataaatcacctatatggaa |
200 |
Q |
| |
|
| |||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||| ||| ||||||||||||| |
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| T |
30280999 |
ttccttcaaccatattctcctttttcaattccttctctgattttggatggagcatagccaaaagctcaatgcttaaagatgacaaaacacctatatggaa |
30281098 |
T |
|
| Q |
201 |
tggtgacgaagg |
212 |
Q |
| |
|
|||||| ||||| |
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|
| T |
30281099 |
tggtgaggaagg |
30281110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 30304357 - 30304146
Alignment:
| Q |
1 |
tcttgtcttcatagagctgatgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggt |
100 |
Q |
| |
|
|||||||| || |||| |||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||||||||||||||||| |
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|
| T |
30304357 |
tcttgtctacaaagagttgatgacccttctcttcctttgtcttttccttcacgcaaaccatcacaattgttatctcccaagaaaggctttttcaagtggt |
30304258 |
T |
|
| Q |
101 |
tcccttcaaccatattctcccttttcaattcaatctctgattttggatggagcatattgaaaagttcaataattgaagatgataaatcacctatatggaa |
200 |
Q |
| |
|
||||||||||||||||| || |||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||| ||| ||||||||||||| |
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|
| T |
30304257 |
tcccttcaaccatattcccctttttcaattccttctctgattttggatggagcatagccaaaagctcaatgcttaaagatgacaaaacacctatatggaa |
30304158 |
T |
|
| Q |
201 |
tggtgacgaagg |
212 |
Q |
| |
|
|||||| ||||| |
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| T |
30304157 |
tggtgaggaagg |
30304146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30032348 - 30032301
Alignment:
| Q |
1 |
tcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct |
48 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30032348 |
tcttgtcttcaaagagctgatgatccttctcttcctttatcttttcct |
30032301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30048594 - 30048547
Alignment:
| Q |
1 |
tcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct |
48 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| | ||||||||| |
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|
| T |
30048594 |
tcttgtcttcaaagagctgatgatccttctcttcctctatcttttcct |
30048547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30062935 - 30062888
Alignment:
| Q |
1 |
tcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct |
48 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| | ||||||||| |
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|
| T |
30062935 |
tcttgtcttcaaagagctgatgatccttctcttcctctatcttttcct |
30062888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 30220331 - 30220378
Alignment:
| Q |
1 |
tcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct |
48 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| | ||||||||| |
|
|
| T |
30220331 |
tcttgtcttcaaagagctgatgatccttctcttcctctatcttttcct |
30220378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30228733 - 30228686
Alignment:
| Q |
1 |
tcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct |
48 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| | ||||||||| |
|
|
| T |
30228733 |
tcttgtcttcaaagagctgatgatccttctcttcctctatcttttcct |
30228686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 2311456 - 2311488
Alignment:
| Q |
16 |
gctgatgatccttctcttcctttgtcttttcct |
48 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
2311456 |
gctgatgatccatctcttcctttgtcttttcct |
2311488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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