View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2949_low_22 (Length: 226)
Name: NF2949_low_22
Description: NF2949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2949_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 42376055 - 42375864
Alignment:
| Q |
16 |
atactgtaaagggaaagaaaactaaaaggcaatgggcaagacaaattataataagcattacaacaaa-aaatggacataccaatgcgcaaccaacgggcg |
114 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| | | |||||||||||||||||||||||||||||||| |
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| T |
42376055 |
atactgtaaagggaaagagaactaaaaggcaatgggcaagacatattataataagcattacaatagataaatggacataccaatgcgcaaccaacgggcg |
42375956 |
T |
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| Q |
115 |
gcccagcttcgagttggatccatcacagaaatgatcctgaaaatcaaaatgaagaagaagaaaacatgacattcagaagcttcaaaggtgattag |
209 |
Q |
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| T |
42375955 |
gcccagcttcgagttggatccattacagaaatgatcctgaaaatcaaaatgaaga---agaaaacatgacattcagaagcttcaaaggtgattag |
42375864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 42404769 - 42404578
Alignment:
| Q |
16 |
atactgtaaagggaaagaaaactaaaaggcaatgggcaagacaaattataataagcattacaacaaa-aaatggacataccaatgcgcaaccaacgggcg |
114 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| | | |||||||||||||||||||||||||||||||| |
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| T |
42404769 |
atactgtaaagggaaagagaactaaaaggcaatgggcaagacatattataataagcattacaatagataaatggacataccaatgcgcaaccaacgggcg |
42404670 |
T |
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| Q |
115 |
gcccagcttcgagttggatccatcacagaaatgatcctgaaaatcaaaatgaagaagaagaaaacatgacattcagaagcttcaaaggtgattag |
209 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42404669 |
gcccagcttcgagttggatccattacagaaatgatcctgaaaatcaaaatgaaga---agaaaacatgacattcagaagcttcaaaggtgattag |
42404578 |
T |
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