View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2949_low_23 (Length: 221)
Name: NF2949_low_23
Description: NF2949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2949_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 10990346 - 10990536
Alignment:
| Q |
18 |
cgcttttgaatagagatgacataaattcttatttggttccgtgtttaagtacatcaacctctcaaatatacgttatcctctcttctgaatcaatcgacta |
117 |
Q |
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| T |
10990346 |
cgcttttgaatagagatgacataaattcttatttggttccgtgtttaagtacatcaacctctcaaatatacgttatcctctcttctgaatcaatcgacta |
10990445 |
T |
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| Q |
118 |
cctccctctttctttttgcaccaaaatgtttaatgtttcattaatcagcatttctcgttctgttccaaaccaaaagtttcttcgtttgatg |
208 |
Q |
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| T |
10990446 |
cctccctctttctttttgcaccaaaatgtttaatgtttcattaatcagcatttctcgttctgttccaaaccaaaagtttcttcgtttgatg |
10990536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 11024798 - 11024859
Alignment:
| Q |
20 |
cttttgaatagagatgacataaattcttatttggttccgtgtttaagtacatcaacctctca |
81 |
Q |
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| T |
11024798 |
cttttgattagagacgacatagattcttatttggttccatgtctaagtacctcaacctctca |
11024859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 11039960 - 11040002
Alignment:
| Q |
117 |
acctccctctttctttttgcaccaaaatgtttaatgtttcatt |
159 |
Q |
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| T |
11039960 |
accttcctctttcgttttgcaccaaaatgtttaatgtttcatt |
11040002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 10929273 - 10929393
Alignment:
| Q |
42 |
attcttatttggttccgtgtttaagtacatcaacctctcaaatatacgttatcctctcttctgaatcaatcgactacctccctctttctttttgcaccaa |
141 |
Q |
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|||| ||||||||||||||| |||| || ||||||||||||| ||||| ||||| ||| |||| | ||| | | | | ||||| | ||||||||||| |
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| T |
10929273 |
attcctatttggttccgtgtctaagcacttcaacctctcaaacatacgctatccctgcttatgaacctatcaaattctttcctctcacgttttgcaccaa |
10929372 |
T |
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| Q |
142 |
aatgtttaatgtttcattaat |
162 |
Q |
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||||| |||||||||| |||| |
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| T |
10929373 |
aatgtataatgtttcagtaat |
10929393 |
T |
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