View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2949_low_24 (Length: 207)
Name: NF2949_low_24
Description: NF2949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2949_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 2e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 12879067 - 12878894
Alignment:
| Q |
18 |
attaattaaagccaaaaattagtagacattttaaagagtaaacttacacataaatagccttgggcataagattgtgtcaatttaagttcaaaacttggat |
117 |
Q |
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| T |
12879067 |
attaattaaagccaaaaattagtagacattttaaagagtaaacttacacataaacggccatggacataacttcgtgtcaatttaagttcaaaacttggat |
12878968 |
T |
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| Q |
118 |
tcacattattggatttctcattaaccactccagttattgaacacctctttgctttcttagtcatgcttcctttg |
191 |
Q |
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| T |
12878967 |
ttccattattggatttctcattaaccactccagttattgaacacctctttgctttcttagtcatgcttcctttg |
12878894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 12192524 - 12192695
Alignment:
| Q |
18 |
attaattaaagccaaaaattagtagacattttaaagagtaaacttacacataaatagccttgggcataagattgtgtcaatttaagttcaaaacttggat |
117 |
Q |
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| T |
12192524 |
attaattaaagccaaaa--tagaagacattttcaaaagtaaacttacaaataagtttccttgggcataaaattgtgtcaatttaagttcaaaacttggat |
12192621 |
T |
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| Q |
118 |
tcacattattggatttctcattaaccactccagttattgaacacctctttgctttcttagtcatgcttcctttg |
191 |
Q |
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| T |
12192622 |
tcttattgttggatttcttattatttgcttcagctattgaacatctcttagccttcttcgtcatgcctcctttg |
12192695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 12977621 - 12977678
Alignment:
| Q |
71 |
atagccttgggcataagattgtgtcaatttaagttcaaaacttggattcacattattg |
128 |
Q |
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| T |
12977621 |
atagccatgggcgtaagattgtgacaaatcaagttcaaaacttggattctcattattg |
12977678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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